Desulfovibrio subterraneus: LN040_11835
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Entry
LN040_11835 CDS
T08953
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN040_11835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsb03019
]
LN040_11835
03009 Ribosome biogenesis [BR:
dsb03009
]
LN040_11835
Enzymes [BR:
dsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN040_11835
Messenger RNA biogenesis [BR:
dsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN040_11835
Ribosome biogenesis [BR:
dsb03009
]
Prokaryotic type
rRNA helicases
LN040_11835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6181
Motif
Other DBs
NCBI-ProteinID:
WBF66420
LinkDB
All DBs
Position
2692542..2694338
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AA seq
598 aa
AA seq
DB search
MTDRPEDVKGEDSRVDETGSEAHSQAASAVRPAADYDPAARIAAEITEIDEPEDALPPVT
LEELPPAMRAACENAGWRSIMPVQSRSIPYQLAGRDIMVQSRTGSGKTGAYLLPAIERLD
ASKPHVQMLVLVPTRELALQVEHEARVLFAGTGLLTCAVYGGVGFGKQMEALRDGAHVVV
GTPGRILDHLLRRTMDLNQVRVLVFDEADRMLSIGFYPDMREIKRYLPKRRSTFLLSATY
PPQIVKLAGEFMHDPCMLSLSHQQVHVADTPHSYYSSKPMEKDRVLVRVLEVVNPASAII
FCNTKANVHFVTAVLKGFGYDADELSADLTQSKREKVLEKLREGKVRFLVATDVAARGID
IPELSHVILYEPPEDRESYIHRAGRTGRAGATGEVISLVDIMQKLELERIAKHYKITMEH
RTTPTDEDLAAVVGQRMTAMLEARLRAKTGLERERMKRFTPMLKSLLADEEALPLVAQLL
DELYQVTLHTPLQMPDAEPETQQYGASQPPRRVTDRKPLRGKGERRERSGGQGGRPSENS
TEVRSEPRRDGQSPDKEAAPASGRANEASGTEEGEGEGRRKRPGRSRRRRKPSAPRQD
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccgtcccgaagacgtgaagggtgaagactctcgcgttgatgaaaccggaagt
gaggcccattctcaggcggcctccgccgtccggcccgcagccgactatgatcccgccgcg
cgcattgccgcagaaattactgaaattgacgaacctgaagacgcgctgccacccgtgacg
ctggaggaactgcctcccgccatgcgagccgcctgcgagaatgcagggtggcgcagcata
atgcccgtgcagtcgcgttccattccctatcagcttgccgggcgcgacatcatggttcag
tcccgcaccggcagcggcaagacgggtgcctacctgttgcccgccattgagcggctggat
gcctccaagccccatgtgcagatgcttgtgctggtacccacccgcgagctggccctgcag
gtggagcatgaagccagagtgctgtttgccggcaccggcctgcttacctgcgccgtgtac
ggcggggtgggcttcggcaagcagatggaagctctgcgcgacggcgctcatgtggtcgtg
ggtacgcccggtcgtattctggatcaccttctgcgtcgcaccatggacctgaatcaggtt
cgtgtgctcgtgtttgatgaagcggaccgcatgctttccatcggtttttatcctgatatg
cgcgaaatcaagcgctacctgcccaagcgtcggtccaccttcctgctttccgccacatat
ccgccccagatcgtcaagctggcgggcgaattcatgcacgatccctgcatgctcagcctg
agccaccagcaggtacacgtggcggataccccccacagctactacagttccaagcccatg
gaaaaagaccgcgtgcttgtgcgcgtgctggaagtggttaaccctgcttccgccatcatc
ttctgcaataccaaggcgaacgtgcatttcgtgaccgccgtgctgaagggctttgggtat
gatgcggacgaactttccgccgatcttacgcagagcaagcgcgagaaggtgctggaaaag
ctgcgcgagggcaaagtgcgttttcttgtggcaacagacgtggctgcgcgtggtatcgat
atccccgaactttcgcacgtcattctctatgagccgccggaagatcgcgaatcctacatt
caccgtgccggcagaacgggccgtgcgggtgccaccggtgaggtcatttcgctggtggac
atcatgcagaagcttgagcttgagcgcattgccaagcattacaagataaccatggagcat
aggaccacgcccacggatgaagatcttgccgctgttgtaggacagcgcatgaccgccatg
ctggaagcgaggctgcgtgcaaaaaccggacttgaacgcgaacgcatgaagcgctttacc
cccatgctgaaaagcctgctggcggatgaagaagcacttccgctggtggcgcagctgctg
gacgagctctatcaggtaacgctgcatacgcccctgcagatgcccgacgcagaacccgag
acgcagcagtatggtgcttcgcagcccccccgcagggtgacagaccgcaagcccttgcgc
ggcaaaggcgaacgcagggaaagaagtggcggtcagggtgggagaccgtcggagaacagc
acagaagtccgttccgaacccagaagggacgggcagtcaccggataaggaggcagctccg
gccagcggacgtgccaacgaggcttccggtaccgaagagggggaaggagaaggcaggcgc
aaacgccccggccgctcccgaagacgcaggaagccctcggctccgcgtcaggattaa
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