Desulfovibrio subterraneus: LN040_13360
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Entry
LN040_13360 CDS
T08953
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN040_13360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsb03019
]
LN040_13360
03009 Ribosome biogenesis [BR:
dsb03009
]
LN040_13360
Enzymes [BR:
dsb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LN040_13360
Messenger RNA biogenesis [BR:
dsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN040_13360
Ribosome biogenesis [BR:
dsb03009
]
Prokaryotic type
rRNA processing factors
LN040_13360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WBF66710
LinkDB
All DBs
Position
3064543..3066012
Genome browser
AA seq
489 aa
AA seq
DB search
MSSSQKKGRRKLFISVLPGEQVEVSLAEEGSVQEYYVEMVHQAKTKGNIYKGTINNIDTN
LQAAFVNYGAEKNGFLQIDEVHPEYYSSPHDPNKGRKYPLIQKVLKAGMEVLVQVVKEPT
GTKGAFLTSYLSLPGRFLVLTPGRDQIGVSRKVEDDKERQRLKKLLEGLDPGENLGVIVR
TVSVDQPKTAMQRDLSFLKRLWKDVRKKATTEPSPSLIYQERDLATRSIRDYLTDDVTEV
WVDDENTAKAVEEFASLVFPRRGLQVRLHTAPEISLWERFNLQKQIEQIYSREVTMPSGG
RLVFDQTEALMAVDINSGKIAGKTNFESMALKTNTEAATTIAQQLKLRDIGGQVVIDFIE
MRDRNHWREVEKTLRQAMKNDRARHDVGKMSRFGLLQVVRQRLGSSALSISSELCPCCGG
SGTRRNMEWQALQALKDILQKLTHSKPTGPMRYECNSELALYLLNHKRERLFEMEQKYDL
RIEVTPKKD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctcccagaaaaagggcagacgcaaactgtttatcagtgtgctgcccggtgag
caggtagaggtgtctctcgccgaagagggttccgtccaggaatactatgtggaaatggtc
caccaggcgaagaccaaaggcaatatctataaaggaacaatcaacaacatcgatacgaac
ctgcaggcggccttcgtcaactatggcgctgaaaagaatggctttctgcagatagacgaa
gtgcatccggaatactattcctcaccgcacgaccccaacaaggggcgcaagtatccgctt
attcaaaaggtgctcaaggcgggcatggaagtgctcgtgcaggtggtcaaagaacccacc
ggaaccaagggcgcatttcttacatcctatctttctcttcccggacgttttctcgtcctt
actcccggtcgcgatcagattggcgtttcccgcaaggtggaagacgacaaggaacgccag
cgcctcaaaaagctgctggaaggtcttgatcccggcgagaaccttggcgtgatcgtgcgc
accgtgagtgtggatcagcccaagaccgccatgcagcgcgacttgagcttcctgaaacgc
ctgtggaaggatgtgcgcaaaaaggccaccaccgagccttcgcccagccttatctatcag
gaacgcgacctcgccacccgttccatccgcgactaccttaccgacgatgttaccgaggtg
tgggtggatgacgaaaataccgccaaggctgtggaagaattcgcaagccttgtgttcccg
cgtcgtggactgcaggtgcgcctgcacaccgctccggaaatttcgttgtgggaacgcttc
aacctgcagaagcagattgagcagatctattcgcgcgaagtgaccatgccctccggcggc
agactggtctttgaccagactgaagcgctcatggccgtggacatcaactccggcaagatc
gcgggcaagaccaatttcgaatccatggcgctgaagaccaacaccgaggcggcgactacc
attgcccagcagctcaagctgcgcgacataggcgggcaggtggttatcgacttcattgaa
atgcgtgatcgcaaccattggcgcgaggtggaaaagaccctgcgtcaggccatgaagaac
gaccgcgcccgtcacgacgtgggcaagatgagccgcttcggcctgctgcaggtcgtgcgt
cagcgccttggctcttcggccctttccatcagctccgagctgtgtccctgctgtggcggt
tccggcacgcggcgcaatatggaatggcaggcactgcaggcgctcaaggatattctgcaa
aaacttactcacagcaagcccactggtcccatgcgctatgaatgcaatagcgaactggcc
ttgtatctgctgaaccacaagcgcgaacgccttttcgagatggagcagaagtatgatctg
cgcatcgaggttacccccaagaaggattag
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