KEGG   Desulfovibrio subterraneus: LN040_15965
Entry
LN040_15965       CDS       T08953                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
dsb  Desulfovibrio subterraneus
Pathway
dsb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LN040_15965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsb03019]
    LN040_15965
Messenger RNA biogenesis [BR:dsb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LN040_15965
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: WBF67191
LinkDB
Position
complement(3667592..3669250)
AA seq 552 aa
MPDHQDFLTLTPLGGYGEIGMNCTIWSTATTSVLVDCGLMFPDDYLLGIDVVIPQFDHIL
RQKEKVRGIVLTHGHEDHIGALPWLMPWLHVPIYGSRFTMALVEHKLREANLLDRSELVV
VEPGQRLALGDMVFNFFPVCHSIIEGFGLGVETPVGRVVHTGDFKLDPNPIDGHSTDLDA
FRRFSDEGVQLLLSDSTNIERDGHSLGEREIRDTFDGIFRDATGRVVVTLFSSHIQRIQE
VFDIAAKYGRKVAVSGRSLLNNIDIARDLGFMRVPSGVYMDPQDMPTLPDNEIVLLVTGS
QGEPLSALSRITRGEHRSLAIKEGDTVIMSSRFIPGNARAITRLINDMYRLGAEVYYENF
RNIHASGHAYREELRTMLETVRPRFFVPVHGEYRHLVKHCRLAHECGIPQEHTIILEDGD
PLTLLPEGIRKEPRINLETVLVDGKGVGDVGSSVLKERQILGGEGMVVVFLVLDEQIWEI
LHGPDIVSKGFIFEAHYNHVLEDAKCIVLDILENMSPGDLEKLQDRIRSTLRRFFRKVLE
RDPVVLPVITMV
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgccggaccaccaagactttctaacgctcaccccgctcggcgggtatggcgaaataggc
atgaactgcaccatctggtccacggccaccacgtcggtgcttgtggattgcggactcatg
tttccggacgactaccttctcggcatcgacgtggtcattccccagtttgaccacattctc
cgccagaaagagaaggtgcgcggcattgtgctcacccacgggcacgaagaccatatagga
gcactgccgtggctcatgccgtggctgcacgttcccatttacggttcacgattcaccatg
gcactggtggaacacaagctgcgggaagccaatctgctcgaccgttccgagctggtggtg
gtggaaccgggccaacgccttgcccttggcgacatggttttcaacttcttccccgtgtgc
cactccatcattgaaggcttcggcctcggcgtggaaactccggtggggcgcgtggtgcac
acgggcgacttcaaactggaccccaaccccatagacggccacagcaccgaccttgacgcc
ttccgccgtttctcggatgaaggcgtgcagttactgctctcggactctaccaacatcgaa
cgcgacgggcattcgctgggcgaacgcgagatccgcgacaccttcgacggcattttccgc
gatgcgaccggccgcgtggtggtcaccctgttctccagccacatacagcgcatacaggaa
gtgttcgacattgccgccaagtacggccgcaaggtggccgtttccggccgcagcctgctg
aacaacatagatattgcccgcgacctcggcttcatgcgcgtgccatccggcgtgtatatg
gacccgcaggacatgcccaccctgccggacaacgagattgttctgctggtcacaggctcg
cagggtgaaccgctttccgccctgtcgcgcattacacgcggcgagcaccgttccctcgcc
atcaaggaaggggacaccgtcatcatgtcgtcccgcttcattccgggcaacgcgcgggcc
atcacccgccttatcaacgacatgtaccgcctcggggcggaggtctattacgagaatttc
cgtaacatccatgcatcgggacacgcctaccgcgaagaactgcgtaccatgctggaaacc
gtgcggccccgcttcttcgtgccggtgcacggcgaataccggcatctggtcaagcattgc
cgccttgcccatgaatgcggcattccgcaggagcacaccatcattctggaagacggagat
cccctcaccctgctgcccgaaggcatacgcaaggaaccgcgcatcaaccttgaaaccgtt
ctggtggacggcaagggcgtgggcgatgtaggctcttccgtactcaaggaacgccagatt
ctgggcggcgaaggcatggtggtagtcttcctcgtgctcgacgaacagatctgggagatt
ctgcacggaccggacatcgtatccaagggcttcatatttgaggcccattacaaccacgtg
ctggaagatgccaaatgcatcgttctggatatactggaaaacatgagccccggcgatctg
gaaaaactgcaggaccgtatccggtccaccctgcgaagattcttccgcaaggtgctggag
cgcgaccctgtggttctgcccgttatcaccatggtataa

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