Desulfovibrio subterraneus: LN040_16180
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Entry
LN040_16180 CDS
T08953
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03410
Base excision repair
dsb03430
Mismatch repair
dsb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LN040_16180 (recJ)
03430 Mismatch repair
LN040_16180 (recJ)
03440 Homologous recombination
LN040_16180 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsb03400
]
LN040_16180 (recJ)
DNA repair and recombination proteins [BR:
dsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LN040_16180 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LN040_16180 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LN040_16180 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
YqbF_HeH
Motif
Other DBs
NCBI-ProteinID:
WBF67232
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Position
3705744..3707450
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AA seq
568 aa
AA seq
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MSKEWIPRSAESAPQELSAWAEQLEISDFLAELLWHRGLQSRDDMQQYLSPFLRQLAPLC
EWPGLDESADVLAQGLAEGRKLAVWGDYDVDGVTSTALVKSFLAGHGISTLHHLPNRMTE
GYGMNVAGVEALHQQGVNMLLTVDCGISDFAPVARARELGMLVVVSDHHLPGEKLPDAHA
ICNPRLRECPCPALAGVGVAFFLMCALNTRLEKQTGIRLDVRPLLDLVALGTIADVVELA
GQNRILVKNGLLVLAEGKRIGMAALKEVSGYAPGASVGAGQVAFGLAPRINAAGRMGKAG
LALDLLLSQDPEEARRLANSLDGMNEERKNEEERIQEAALSQAQTQLGRNALVLYGEDWH
SGVIGIVASRVVEQHYRPTVILCREGDVIKGSARSISEFHLHEGLTRCADLFVGFGGHKL
AAGMSFVPDRLDAFRERFIGIVEQAIGTQPLTAHLRVDGEMGFAQASDFTLLKELELLQP
FGMGNGEPVFASPPLLVKSRRVFARKHLKLELFDGTCGITLHAKAWRMAEAMPPMIEGRN
IRLAFSPRIDRYNGGAEVDLRIKDWKLV
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaagaatggattccccgttccgcagagtctgcgccgcaggagctttccgcgtgg
gcggagcaactcgaaatttccgattttctggctgaacttctctggcaccgcggcctgcag
tcccgcgacgacatgcagcagtatctgagcccttttctgcgccagctggcgccgttgtgc
gaatggccggggctggacgagtcagcggatgttctggcgcaggggctggcggaaggtcgc
aagctggctgtgtggggcgactatgatgtggatggtgtgacctccaccgcgctggtgaag
agttttcttgcagggcatggcataagtaccctgcaccatctgcccaaccgcatgacggaa
ggctacggcatgaacgtggccggagtggaggccctgcaccagcagggcgtgaacatgctg
cttaccgtggactgcggtatttccgacttcgcgcccgtggcccgcgcccgcgagcttggc
atgcttgtggtggtttccgaccaccatcttcccggtgaaaaattgccggacgcgcatgcc
atctgcaatccccgcctgcgggagtgtccctgtccggcactggccggtgtgggcgtggcc
tttttcctcatgtgcgctctgaacacgcggctggaaaagcagaccggcatcaggctggat
gtccgcccgctgcttgatctggtggcgctcggcaccattgccgatgtggtggagcttgca
gggcagaaccgcattctggtcaagaacggcctgcttgttctggcagaaggcaagcgcata
ggcatggccgccctcaaggaagtttccggctacgctcccggcgcgtccgtcggggcgggg
caggtggcgttcgggcttgcgccgcgcatcaatgcggcgggccgcatgggcaaggccgga
ctggctctggacctgctgctctcgcaggaccccgaagaggcccgcaggcttgcgaactcg
ctggacggcatgaacgaggagcgcaagaacgaggaagaacgtattcaggaggcagcgctc
agccaggcgcaaacgcagctcggcagaaatgcgttggtgctgtatggcgaggactggcat
tccggtgtcataggtattgtggcttcccgcgtggtggagcagcattaccggcccacggtc
attctctgccgcgaaggagacgtgatcaagggttccgcccgttccataagtgaatttcat
ctgcatgaagggcttacccgctgcgccgatctgtttgtgggattcggcggccacaagctg
gcggcgggcatgtcctttgtccctgacaggctggatgccttcagggaacggtttatcggc
atagtggagcaggccataggcacgcagcctctcacggctcaccttcgtgtggacggcgaa
atgggattcgctcaggcttcggactttaccctgctcaaagagctggaattgctgcaacct
ttcggtatgggcaacggcgagcccgtgtttgcctctccgccgctgctggtgaaatcgcgc
cgcgtgtttgccagaaagcatctcaagctggagctcttcgacggcacgtgcggcataacc
ctgcatgccaaggcgtggcgtatggcagaagccatgccccccatgatcgaggggcggaat
attcgtcttgccttttctccccgcatagaccgctataacggcggggcagaggtagacctg
cggatcaaggattggaaactcgtttaa
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