KEGG   Desulfovibrio subterraneus: LN040_17505
Entry
LN040_17505       CDS       T08953                                 
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
dsb  Desulfovibrio subterraneus
Pathway
dsb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LN040_17505 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dsb03400]
    LN040_17505 (uvrA)
DNA repair and recombination proteins [BR:dsb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LN040_17505 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LN040_17505 (uvrA)
SSDB
Motif
Pfam: UvrA_inter ABC_tran UvrA_DNA-bind SMC_N AAA_21 AAA_29 AAA_16 AAA_23 AAA_25 nSTAND1 RsgA_GTPase DnaJ_CXXCXGXG AAA_33 AAA_22 nSTAND3 NACHT AAA_18 ATPase_2 PhoH ScfRs YhfH
Other DBs
NCBI-ProteinID: WBF67478
LinkDB
Position
4020728..4023505
AA seq 925 aa
MTQKNCIHIEGARQHNLKNLTLDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESL
SAYARQFLPQMDKPEVDKIEGLSPAISLEQQASSRNPRSTVGTVTEIYDFLRVFYARLGT
MYCPECGKPIAARAADEIIADILALPEGTKFMVLAPLVEHQKGTHADRFKKLKAEGFVRV
RVNGDVLTIDDVPALEKNKKHNIELVIDRLVMKDGLRGRLADSVELALKYGEGRLIVSVV
GGEETIHSTESVCPTCKISLPKLSPQIFSFNSPQGACPRCYGLGTIDYFEPNLLVPNKGL
SLADGGLLPWKNPKVMGRYEAGLKALGKEYGFTLSTPFREYSDVAWNALFFGDRKTDWEG
VTSILERGMEFGQTWRDELSRFRQSKPCPKCNGARLKDESLAVRVDDLSIFAFCSLSVGR
ALEWLQGRTFDKSLGIIAEPLMKELTHRLGFMVNVGLDYISLGRNMSTLSGGEAQRIRLA
SQLGSGLVGVTYVLDEPSIGLHPKDNERLINTLRSLQRRGNTVLVVEHDEATIREADTVI
ELGPGSGMLGGDIMFNGPVKELLAHSESLTAKYLRGEMVIELPETRREGDKALILKGVTT
NNLQNVDVRFPLGALTCVTGPSGSGKSSLVVDSLYKHIALHQSIKVDSPGQIQGIEGLED
IERIVAIDQTPIGRTPRSNPATYTKVFDEIRNIFAMSPDAKKRGYKPGRFSFNVRGGRCE
ACGGDGQIRVEMHFLPDVYVTCDVCKGKRYNHETLEVRYKGKNIAEVLDMTVRQAKVFFE
NYPVLERRLAVLEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTT
GLHMHEVGKLIRVLHQLVDRGATVVVIEHNTDVIMASDYVIDLGPGGGENGGRIVSSGTP
EAIIADPNSVTGSFLEKDRLTRANG
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgacgcaaaagaattgtatccatatagaaggcgcaaggcagcacaacctcaagaatctc
actctggacatcccccgcgacgaactggtcgtggtgtgcggtccctcggggtcgggcaag
tccacgctggcgttcgacatcgtctatgccgaagggcagcggcggtatgtggaatcgctt
tctgcgtatgcacgtcagttcctgccgcagatggacaagccggaagtggacaagattgag
ggcctttctcctgccatttcgctggaacagcaggcttcgtcccgcaacccgcgttctacc
gttggtacggtgacggagatatacgactttctgcgcgtcttttacgcccgccttggcacc
atgtattgccccgaatgcggcaagcccattgctgcccgcgccgcggacgagatcattgcc
gacatcctcgccctgccggaggggaccaagttcatggtgctggcaccgctggtggagcat
cagaaagggacccatgccgaccgcttcaagaagttgaaggcggaagggtttgtccgtgtg
cgggtaaacggcgatgtgctgaccattgatgatgtgcccgcgcttgagaaaaacaagaag
cacaatatcgagctggtcatcgaccgccttgtcatgaaggatggtctgcgcggccgtctg
gccgattcggttgagcttgccctgaaatatggtgaaggccgccttatcgtttccgtggtg
ggcggggaagagaccatccattccacggaatccgtctgccccacctgcaagatcagtctt
cctaaactctctccgcagattttttctttcaacagcccgcagggtgcctgcccgcgttgt
tacggccttggtaccatcgactatttcgaacccaatctgctggtgcctaacaagggcctt
tctttggcggatggcggcctgctgccgtggaaaaatcccaaggtcatggggcgttacgaa
gccggcctgaaggctctgggcaaggagtatggtttcacgttgtctacgccgttcagggag
tattcggacgtggcgtggaatgctcttttcttcggcgacaggaagacggactgggagggc
gtgacctccattctggaacgcggcatggaatttggccagacctggcgcgatgagctgtcc
cgtttccggcagagcaagccctgtcccaaatgcaacggcgcacgtctcaaggacgagtct
cttgccgtgcgcgtggacgatctttccatttttgctttctgctccctttccgtggggcgt
gcgttggaatggctgcagggacgcaccttcgacaagtcgctgggcatcattgccgagccg
ctgatgaaggagcttacccatcgcctcggtttcatggtgaatgtgggactcgactacatt
tccctcggccgcaacatgtccacgctttccggcggcgaggcgcagcgaatccgccttgca
tcgcagcttggctccggtctggtgggcgtgacctacgtactggacgaaccttccatcggc
ctgcatcccaaggacaacgaacggctcatcaatacgctgcgcagcctgcagcggcggggc
aataccgtgctggtggtggagcatgacgaggcaaccatccgcgaggctgataccgttatc
gagcttggtcccggttccggcatgcttggcggcgatatcatgttcaacgggccggtcaaa
gaactgctggcgcattccgaatcgcttacggccaagtatctgcgcggtgaaatggtcatc
gaactgcccgagacgcgcagggaaggggataaggcccttatcctgaaaggcgtgaccacc
aataacctgcagaatgtggacgtgcgcttcccccttggggcgctcacctgcgtgaccggt
ccttccggttccggcaaaagctcgctggtggtggattcgctctacaagcacattgccctg
catcagtccatcaaggttgacagccccgggcagattcagggtattgaaggacttgaagat
attgaacgaatcgttgccatagaccagacgcccatcgggcgcacaccgcgttcgaacccg
gcaacttacaccaaggtttttgacgagatccggaatatttttgccatgtcgcccgatgcg
aagaagcgcggctacaagcccggacgtttcagcttcaacgtgcgaggcggccggtgcgaa
gcctgcggcggcgacgggcagatcagggtggaaatgcattttctgcccgatgtctacgtg
acctgcgatgtctgtaagggcaagcgctacaatcacgagacgcttgaggtgcggtacaag
ggcaagaacattgccgaggtgctggacatgacagtgcggcaagccaaagtgttctttgaa
aattatcctgtcctggaacgccgtcttgctgtattggaagatgtggggctggagtatctc
cggctcgggcagcccgccaccacgctttccggcggcgaggcccagagaatcaagatttcc
cgtgaactcggcaaacgcagtctgccgggaacgttgtatattctggatgaacccaccacc
ggcctgcatatgcatgaagtgggcaagctcatccgcgtgttgcaccagcttgtggacagg
ggcgcgacggttgtcgtgatcgaacataataccgatgtgatcatggcctcggattatgtt
atcgacctcggtcccggcggaggcgaaaacggcggcaggatcgtatcttccggcacgccg
gaggcgattatagccgatcccaactctgtaaccggttcctttttggaaaaagaccggctt
acccgtgcaaacgggtag

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