Desulfovibrio subterraneus: LN040_17640
Help
Entry
LN040_17640 CDS
T08953
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb00260
Glycine, serine and threonine metabolism
dsb00460
Cyanoamino acid metabolism
dsb00630
Glyoxylate and dicarboxylate metabolism
dsb00670
One carbon pool by folate
dsb00680
Methane metabolism
dsb01100
Metabolic pathways
dsb01110
Biosynthesis of secondary metabolites
dsb01120
Microbial metabolism in diverse environments
dsb01200
Carbon metabolism
dsb01230
Biosynthesis of amino acids
dsb01240
Biosynthesis of cofactors
dsb04981
Folate transport and metabolism
Module
dsb_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
LN040_17640
09102 Energy metabolism
00680 Methane metabolism
LN040_17640
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
LN040_17640
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
LN040_17640
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
LN040_17640
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
LN040_17640
Enzymes [BR:
dsb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
LN040_17640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Beta_elim_lyase
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
WBF67505
LinkDB
All DBs
Position
complement(4053798..4055036)
Genome browser
AA seq
412 aa
AA seq
DB search
MDELFLQDPEVARAMYLEIERQTGGLELIASENFVSSAVRQTQGSVMTHKYAEGYPGKRY
YGGCEFVDMAEDLAINRAKTIFGAEYANVQPHSGSQANMAAYFAIAKPGDTILGMDLSHG
GHLTHGSPVNFSGRFFNVVFYGVQKETGRIDYDQVEKLAKEHKPTVIVAGASAYPRELDF
ARFRSIADEVGAKLMVDMAHIAGLVAAGVHSSPIPYAHITTTTTHKTLRGPRGGMILSSE
DLGKSLNSQIFPGIQGGPLMHVIAAKAVAFGEALRPEFADYQKQVVANAQALAKCLTDQG
FELVSGGTDNHLMLVDLSNKDITGKAAQLALDEAGITVNKNTVPFETRSPFVTSGIRIGT
PALTTRGMKGKDMEKVADWIIDALGNIENETRLKAIRKEVELFARQFPIFAW
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggacgaactgttcttgcaagaccccgaagtagcacgggcaatgtatctggaaatcgag
cgccagaccggcgggctcgaacttatcgcatccgagaacttcgtctcttccgcagtgcgc
cagacgcagggtagcgttatgacgcacaagtatgccgaaggatacccgggcaagcggtac
tatggcggttgtgagttcgtggatatggccgaagatctggccataaaccgcgcaaaaacc
attttcggggccgaatacgccaacgtgcagccccactccggcagccaggccaacatggcg
gcatacttcgccattgccaagcccggcgacaccattctgggtatggatctttcccacggc
ggccacctcacccacggcagccccgtgaacttctccggtcgtttcttcaacgtcgtcttc
tacggcgtgcagaaggaaaccggccgcatcgactatgatcaggtggaaaagctcgccaag
gaacacaagcccactgtcatcgtggccggcgcaagcgcttatccccgcgaactggatttc
gcacgcttccgctccattgccgacgaagtaggcgcaaagctcatggtggacatggcgcac
atcgccggccttgtggccgcaggcgtgcacagctcccccattccctacgcacacatcacc
accacgaccacccacaagacccttcgcggtccgcgcggcggcatgattctcagctccgag
gatctcggcaaatccctgaacagccagatattccccggcattcagggcggtccgctcatg
cacgtcatcgctgccaaggccgttgccttcggcgaggctctgcgccccgaattcgctgac
taccagaagcaggttgtggcaaacgcacaggcacttgccaagtgcctgaccgatcagggc
ttcgagctcgtttccggcggcactgacaaccacctcatgctggttgacctgtccaacaag
gacatcaccggcaaggccgcacagctggcgctggacgaagcaggcatcaccgtgaacaag
aacaccgtgcccttcgaaacccgcagccccttcgtgacctccggtatccgcatcggcacc
cctgccctcaccacccgtggcatgaagggcaaggacatggaaaaggtcgccgactggatc
atcgacgcgctcggcaatatcgaaaacgaaacgcgcctcaaggccatccgcaaggaagtg
gaactcttcgcgcgccagttcccgatcttcgcctggtag
DBGET
integrated database retrieval system