Deinococcus sonorensis: ABOD76_14840
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Entry
ABOD76_14840 CDS
T10415
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dsc Deinococcus sonorensis
Pathway
dsc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABOD76_14840 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsc03021
]
ABOD76_14840 (rpoC)
03400 DNA repair and recombination proteins [BR:
dsc03400
]
ABOD76_14840 (rpoC)
Enzymes [BR:
dsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABOD76_14840 (rpoC)
Transcription machinery [BR:
dsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABOD76_14840 (rpoC)
DNA repair and recombination proteins [BR:
dsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABOD76_14840 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XBV84716
UniProt:
A0AAU7U9G7
LinkDB
All DBs
Position
1958087..1962754
Genome browser
AA seq
1555 aa
AA seq
DB search
MKDFSKVRIAIASPTKIREWSYGEVEKPETINYRTLKPEREGLFDERIFGPTKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAA
QLEKVLYFSSFLVTKPENAQKDGRPLKRGELLSDEEYRELRYGRQETYALQGGIDAVIRD
GEYVTRGQSLGGNTVSKMDGLAQYRFPRRAELRYREQRSAVLPVSSELLVEQDSFRAGEI
LAELESDLNITAPDAGYVFLHDLGEDSVLIELRPEEEAPATVSVYIPHGMELMVAPGERV
EAGTLLAQAASGARLRTSRVSSLSSVVFPKKRGDVTANVHWERVVSYPINPTMHVLIGDG
SDVRKGQKVVGAIDKEEEIIAEADGTVSLHAPASIIVSKAKVYPYQDEPLVVNGDRVEPG
DELADSGALRSEISGRIELDLVRKQVRVIESYDFEAKMGAEAIKELLDELDLPTLEAELN
EQMKDSSRHKRAKARKRLEVTRSFIASGNHPSWMILNTVPVMPPDLRPMVQVEGGRFATS
DLNDLYRRLINRNNRLKKLMSQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDR
SLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALELFKPFLF
KVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGIQAFEP
VLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSSHNLLSPANGEPN
VKPSRDIILGIFTLTQLRRDNLGAGTEFSTPQEVLEALDAGRLALNSPVMLNGTETSPGR
LRYVFSSPDEAILAVERSTIDYQDHVRIRLNGVVHETSAGRVLFRRLVQEALNEGQQHLV
DSLVNLETAYEKDSLKDLIMACFKRLGIEATAKLLDALKDSGFKLSTTSGITIGIDDIVI
PPAKAGILAEADGKLAEIEQSFEFGFMTEEERYKQVVQLWNDTTDSVKNEVFKNFEKNYP
FNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIKASFREGLTVAEYFISTHG
ARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVVPLGSTDERSGEWRSRK
ASEIETSLYGRTLTADLELEERTVPAGEMLSLEDIKALSKQAKAVREVFVRTPLNCRVKA
GVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDITMGLPR
VIELFEARKPKTQAEVADRDGIVRIEEEEERYLVKIEADDEAYSSKTAKKISKNLRMIVR
DGDRVEAGQALTRGAINPHDLLQYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIEVIVRQ
MLRWVEITDGGDTEFLEGQTVERWEVDQANEALTDAQTAVSWKPVLLGITKSSLTTKSWL
SAASFQHTTHVLTEASMKGQVDELIGLKENVILGKLIPAGTGLGMVRAMQVADDRTLEKY
GESSDGSPLPRSEAPAPVVRSSRARPTELKPSLTPIRKRVGVFSCRGPPARLQIR
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttttccaaggtccgtatcgccatcgccagccccaccaagatccgtgagtgg
agctacggcgaggtcgagaagccggaaaccatcaactaccgcaccctgaagccggagcgc
gagggcctcttcgacgagcgcatcttcgggccgaccaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgctacgagggcaaggtctgtgagcgctgcggcgtggaagtcacc
agcagcaaggtgcgccgctaccgcatgggtcacattgacctggcgaccccggccgcccac
atctggtacgtcaaggacacccccagcaagatcggcacgctgctggacctgagcgcggcc
cagctggagaaggtgctgtacttcagcagcttcctggtgaccaaaccggagaacgcccag
aaggacggccgcccgctcaagcgcggcgagctgctcagcgacgaggagtaccgcgagctg
cgctacggccgccaggagacctacgcgctgcagggcggcatcgacgccgtcatccgtgac
ggcgagtacgtcacgcgtggccagtcgctgggcggcaacaccgtctccaagatggacggt
ctggcgcagtaccgcttcccgcgccgcgccgagctgcgctaccgcgagcagcgcagcgcc
gtgctgccggtcagcagcgagctgctggtggagcaggacagcttccgcgccggtgagatc
ctggccgagctggagagcgacctgaacatcactgcgcccgacgccggctacgtgttcctg
cacgacctgggcgaagacagcgtgctgatcgagctgcgtccggaagaggaggcgccggcc
accgtcagcgtctacatcccgcacggcatggaactgatggtcgcccccggcgagcgcgtg
gaggccggcaccctgctggcccaggccgccagcggcgcccgcctgcgcaccagccgcgtg
agcagcctcagcagcgtcgtgttccccaagaagcgcggcgacgtgacggcgaacgtgcac
tgggagcgggtggtcagctacccgatcaaccccaccatgcacgtgctgatcggcgacggc
agcgacgtccgcaagggccagaaggtcgtcggcgcgatcgacaaggaagaggagatcatc
gcggaggccgacggcaccgtcagcctgcacgctcccgccagcatcatcgtgtccaaggcc
aaggtctacccctaccaggacgagccgctggtcgtgaacggcgaccgcgtcgagccgggc
gatgagctggccgacagcggcgcgctgcgcagcgagatcagcgggcgcatcgagctggac
ctggtgcgcaagcaggtgcgggtcatcgagagctacgacttcgaggccaagatgggcgcc
gaggccatcaaggaactgctggacgagctggacctccccaccctggaggccgagctgaac
gagcagatgaaggactccagccggcacaagcgtgccaaggcccgcaagcgcctggaagtg
acccgcagcttcatcgccagcggcaaccaccccagctggatgatcctgaacaccgtgccg
gtcatgccgccggacctgcgtccgatggtgcaggtggagggtggccgcttcgccacctcc
gacctcaacgacctgtaccgccgcctgatcaaccgcaacaaccgcctcaagaagctgatg
agccagggcgccccggacatgatcatccgcaacgagaagcggatgctgcaggaagcggtg
gacgcgctgatcgacaacggtcgccgcggcagccccgtcaccaaccccggctcggaccgc
agcctgcgctcgctgaccgacctgctgggcggcaagcagggccgcttccgccagaacctg
ctgggtaagcgcgtggactactcgggccgctcggtgatcgtggtgggtccgcagctgaag
ctgcaccagtgcggtgtgcccaagcgcatggcgctcgaactcttcaagccgttcctgttc
aaggtgctggaagagaagggcgaggtcaccaacatcaagcaggcccgcaagatgctcgag
cgctaccgcgacacccgcgacagcgtctgggacgccctggaagaggtgatcgaggacaag
gtcgtgctgctcaaccgcgcgcccaccctgcaccgtctgggcatccaggccttcgagccg
gtgctggtggaaggccagagcatccagctgcacccgctggtctgtgaggcgttcaacgcc
gacttcgacggcgaccagatggcgatccacgtgccgctgagcgcccaggcgcaggccgag
gcccggatccagatgctcagctcgcacaacctgctgagcccggcgaacggcgagccgaac
gtcaagccgagccgcgacatcattctgggcatcttcaccctgacccagctgcgccgcgac
aacctgggcgccggcaccgagttcagtacccctcaggaggtgctggaggcgctggacgcc
ggccgactggcgctgaacagcccggtgatgctgaacggcaccgagaccagccccggtcgc
ctgcggtacgtgttcagcagcccggacgaggcgatcctggcggtggagcgcagcaccatc
gactaccaggaccacgtgcggatccgcctgaacggcgtggtgcacgagaccagcgcgggc
cgcgtgctgttccgtcgcctggtgcaggaggccctgaacgagggccagcagcacctggtg
gacagcctggtcaacctggagacggcctacgagaaggacagcctcaaggacctgatcatg
gcctgcttcaagcggctgggcatcgaggcgaccgccaagctgctcgacgcgctgaaggac
agcggcttcaagctgtcgaccacctcgggcatcaccatcggcattgacgacatcgtgatt
ccgccggccaaggcgggcatcctggcggaggccgacggcaagctggccgagatcgagcag
agcttcgagttcgggttcatgaccgaagaagagcgctacaagcaggtggtgcagctgtgg
aacgacaccaccgacagcgtgaagaacgaggtcttcaagaacttcgagaagaactacccg
ttcaacccgctgtggatcatgagccagtcgggcgcccgtggtaacccgcagcagatccgt
cagctggccggcatgcgcggtctgatggcccgcccggacggcagcaccatcgaggtgccg
atcaaggccagcttccgcgagggcctgaccgtggccgagtacttcatcagcacgcacggc
gcgcgtaagggtggcgccgacacggcgctccggaccgccgactccggctacctgacccgt
aagctggtggacgtggcccacgaggtcgtggtgcgcgacgtggactgcggaaccaccgac
tacaccgtggtgccgctcggcagcaccgatgagcgctccggcgagtggcgcagccgcaag
gccagcgagatcgagaccagcctgtacggccggaccctgaccgcggacctggagctggag
gagcgcaccgttccggcgggcgagatgctcagcctggaggacatcaaggcgctcagcaag
caggccaaggccgtgcgcgaggtgttcgtgcggaccccgctgaactgccgcgtgaaggcc
ggtgtgtgccagaagtgctacggctacgacctgtcgcaggccaagccggtcagcatgggc
gaggccgtgggcgtggtggccgccgagagcatcggcgagcccggcacccagctgaccatg
cgcaccttccacaccggcggtgtggcgggcggcggcgacatcaccatgggtctgccgcgc
gtgatcgagctgttcgaggcgcgcaagcccaagacccaggcggaagtcgcggaccgcgac
ggcatcgtgcggatcgaggaggaggaggagcgctacctcgtcaagatcgaggccgacgat
gaggcctacagcagcaagaccgccaagaagatcagcaagaacctgcgcatgatcgtgcgc
gacggcgaccgggtcgaagccggccaggcactgacgcgcggcgcgatcaacccgcacgac
ctgctgcagtacaaggacaccgacgccgcccagcgctacctggtggaagaggtgcagcgt
gtgtaccgcagccagggcgtgaaggtgcacgacaagcacatcgaggtgatcgtgcgccag
atgctgcgctgggtcgagatcaccgacggtggcgacaccgagttcctggaaggccagacg
gtcgagcgctgggaagtggatcaggccaacgaggccctgaccgacgcccagacggccgtg
agctggaagccggtgctgctcggcatcaccaagagcagcctgaccaccaagagctggctc
agcgcggcgagcttccagcacaccacccacgtgctgacggaagccagcatgaagggtcag
gtggacgagctgatcggcctgaaggagaacgtgattctcggcaagctgatcccggccggc
accggcctgggcatggtgcgcgccatgcaggtggcggacgaccgcaccctggagaagtac
ggcgagagcagcgacggcagcccgctgccgcgcagcgaggctccggccccagtcgtccgc
tccagccgggcgcgaccgactgagctgaagccctcactgacccccatccggaaacgggtg
ggggttttttcgtgccggggaccgcctgcccggctgcaaatccgttag
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integrated database retrieval system
