Deinococcus sonorensis: ABOD76_19380
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Entry
ABOD76_19380 CDS
T10415
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dsc Deinococcus sonorensis
Brite
KEGG Orthology (KO) [BR:
dsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsc03032
]
ABOD76_19380 (topA)
03400 DNA repair and recombination proteins [BR:
dsc03400
]
ABOD76_19380 (topA)
Enzymes [BR:
dsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ABOD76_19380 (topA)
DNA replication proteins [BR:
dsc03032
]
Prokaryotic type
DNA Topoisomerases
ABOD76_19380 (topA)
DNA repair and recombination proteins [BR:
dsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ABOD76_19380 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
XBV85566
UniProt:
A0AAU7UAS4
LinkDB
All DBs
Position
complement(2877182..2880139)
Genome browser
AA seq
985 aa
AA seq
DB search
MPKTLVIVESPAKARTIEKYLGKGYTVESSIGHIRDLPRSAAEIPERYKNESWARLGLNV
EEDFRPLYVVSAEKRQHVARLRKLTSEADELILATDDDREGESIAWHLLQELKPKVPVRR
MVFHEITKEAIQSAIQHPRDIDTNLVEAQEARRALDRLYGYEVSPVLWRKVAPKLSAGRV
QSVATRLLVERERERMRFVSAGWWDIEAQCDAAGAQFPARLTELEGRRLALGRDFDPLTG
RLKPGSEVALLDEPQARALAEALTGSALTVTSAEEKPYTQRPYPPFITSTLQQEGSRKLG
FGAQRTMRAAQKLYEGGYITYMRTDSPSLSAEAMTAARSQVKAMYGDAYLSPQPRVYSSK
SKNAQEAHEAIRPAGNSFRTPDSLRAELGTDEWRLYDLVWKRTVASQMADARGRRMQVRL
GGQTRDGRPVQFSASGRAIDFPGFLRAYVEGSDDPAAALEDREVILPPLTQGQAVTGQRM
DASGHETQPPARYTEASLVQALEAAGIGRPSTYASIIGTIQDRGYAAKKGSALVPTWTAF
ATSALLEHHFSSLVDYDFTARMEEELDDIAGGRKQRTPYLRGFYLGDQGGMGLKPLIASN
MEAIDARAVATIEVPRLAGSGIEVRVGKYGPYMSQGEARANIPEDLAPDELTLERAQELM
SRPSGDQVLGQDPETGLPVIAKAGRFGPYVQLGDTTPPSRTASLFPTDDLNTLTLERALQ
LLTLPRLVGTLEGEEVWALNGKFGPYLKRGTDSRSLTSHEQLFTVTLPEAEALFQQPRFR
GRGATAGPLKSFEYPDRTAISLRSGRFGPYLTDGERNATLRKGEDGPDLSADDARSILEE
RGKEPKKKPGKPARKAAAKAPAKAAKKPAGKASAGRTGRSAPAEGGMAIHTPLKSAARKA
PAKAAGKSKSAAKKPATAPKAALAWADLKPHLGVLSEQERALVTATREQGRKVEEVAPGL
GLDIKKAKGMALQASKKLNQAARGG
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagaccctcgtgatcgttgaatctccggccaaagcccgcaccatcgaaaagtat
ctcggcaaggggtacacggtggagtcgagcatcggtcatattcgtgacctgccgcgcagc
gcggcggagatcccggagcgctacaagaacgagagctgggcgcggctggggctgaacgtc
gaggaggacttccggccgctgtacgtggtgtcggcggagaagcggcagcatgtggcccgg
ctgcgcaagctgaccagcgaggccgacgaactgattctggcgaccgacgacgaccgcgag
ggcgagagcatcgcgtggcacctgctgcaggagctcaagcccaaggtgccggtgcgccgg
atggtgttccacgagatcaccaaggaagcgatccagagcgccatccagcacccgcgcgac
atcgacaccaatctggtggaggcgcaggaggcccggcgtgctctggaccggctgtacggc
tacgaggtgagcccggtgctgtggcgcaaggtggcgcccaagctgtcggccggccgggtg
cagagcgtggccacccgcctgctggtggagcgagaacgtgagcggatgcgtttcgtgtcg
gccggctggtgggacatcgaggcgcagtgtgacgctgcgggcgcgcagttcccggcccgg
ctgaccgagctggaaggccggcgtctggccctgggccgcgactttgacccgttgaccggc
cggctgaagcccggcagcgaggtggccctgctggatgagccgcaggcccgggcgctggcc
gaggcgctgaccgggtcggccctgaccgtgaccagcgctgaggagaagccgtatacccag
cggccctacccgccgttcatcaccagcacgctgcaacaggaaggctcgcgcaagctgggt
ttcggggcgcagcgcaccatgcgggcggcccagaagctgtacgagggcggctacatcacc
tacatgcgcaccgacagccccagcctctcggccgaggcgatgaccgccgcgcgcagtcag
gtgaaggccatgtacggtgacgcctacctgtcgccgcagccgcgcgtctacagcagcaag
agcaagaatgcccaggaggcgcacgaggcgatccggccggccggcaacagcttccgcacc
cccgacagcctgcgcgctgagctgggcacagacgagtggcggctttacgatctggtgtgg
aagcgcacggtggcctcgcagatggccgacgcgcgcggtcgccggatgcaggtgcgtctg
ggcggccagacccgggacgggcggccggtgcagttcagcgcctcgggccgcgccatcgac
ttccccggcttcctgcgcgcctacgtggagggcagcgacgatccggccgccgcgctggag
gaccgcgaggtgatcctgccgccgctgactcagggccaggcggtcaccggccagcgcatg
gacgccagcggccacgagacccagccaccggcccgctacaccgaggcctcgctggtgcag
gcgctggaagccgcaggcatcggccggccgtccacctacgcgagcatcatcggcaccatt
caggaccggggctacgccgccaagaagggctcggcgctggtgcccacctggaccgccttc
gccaccagcgcgctgctggaacaccacttctcctcgctggtggactacgacttcaccgcc
cgcatggaggaggaactggacgacatcgcggggggccgcaagcagcgcacgccctacctg
cgcggcttctacctgggcgaccagggcggcatgggcctcaagccgctgatcgccagcaac
atggaggccatcgatgcccgcgcggtggccaccatcgaggtgccacgtctcgctggaagc
ggcatcgaagtgcgggtcggcaagtacggcccgtacatgagccagggcgaggcccgcgcc
aacattcccgaggacctcgccccggatgagctgacgctggagcgcgcccaggagctgatg
agccggcccagcggcgatcaggtgctggggcaggacccggagacggggctgccggtcatt
gccaaggccgggcgtttcgggccgtatgtgcagctgggcgacaccacgccgcccagccgg
accgccagcctgtttcccaccgatgatctgaataccctgacgctggagcgcgccctgcaa
ctgctgacgctgccccgactggtcgggacgctggagggagaggaggtctgggcgctgaat
ggcaagttcggtccgtacctgaagcgcggcaccgacagccgcagcctgaccagccacgag
cagctgttcaccgtcacgctgccggaggccgaggcgctgttccagcagccgcgcttccgg
ggccggggcgcgacggccgggccgctcaagagcttcgagtacccggaccgcacggccatc
agcctgcgcagcgggcgtttcggtccgtacctgaccgacggggagcgcaacgccaccctc
cgcaagggggaggacggccccgacctgagcgctgacgacgcccgcagcatcctggaggag
cgcggcaaggagcccaagaagaagccgggcaagccggcgcggaaggcggcggccaaggcc
ccggccaaagcggcgaagaagccggccgggaaggccagcgccggccggacagggcgcagc
gctcccgccgagggcggcatggccatccataccccgctcaagtcggcggcccgcaaggcg
cccgccaaggcggcaggcaagtccaagagcgcggccaagaagccggccacggcgcccaag
gcagcgctggcctgggctgacctgaaaccgcacctgggcgtgctgagcgagcaggaacgc
gccctggtgaccgccacccgcgagcaggggcgcaaggtggaggaggtcgcgccgggcctg
ggtctggacatcaagaaggccaagggcatggcgctgcaggccagcaaaaaactcaatcag
gcggcgcggggcggctga
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