Desulfolutivibrio sulfodismutans: GD606_01385
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Entry
GD606_01385 CDS
T06784
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dsd
Desulfolutivibrio sulfodismutans
Brite
KEGG Orthology (KO) [BR:
dsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsd03016
]
GD606_01385
Enzymes [BR:
dsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GD606_01385
Transfer RNA biogenesis [BR:
dsd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GD606_01385
Prokaryotic type
tRNA splicing ligases
GD606_01385
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLA11026
LinkDB
All DBs
Position
complement(317649..319076)
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AA seq
475 aa
AA seq
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MRISELRRIDGWIWEVPRTGAMRVPGRIYADKRLIEDMEDTVLAQVKNVASLPGIVTASF
AMPDAHSGYGFPIGGVAAFDPDTGVVSAGGVGFDIACGVRTLVSNLFADDLAGRVPALAD
ALFSRIPAGVGSTGAVRLTAGELDAMLAGGAVWAVSRGFGEKADLDRIEERGRMDGARPE
MVSEAAKARQKDQMGTLGAGNHYLEVQVVEEIFNDAAAGLYGLHPGQVAVAIHCGSRGLG
HQIGTDYLKRMHDHAAKTGVSFPDRELAHAPIASDLGQRYLGAMRSGINAALANRQILTH
MVREVFAEMFPGSRLALLYDVSHNTCKAETHMVDGVPRLLFVHRKGATRSLGPGHPDLPP
GLAAAGQPVLVGGSMGTASFILSGTAAAETRAFASACHGAGRAMSRKQAARHFKPRTVLE
DLEHMGVAVRAHDFRGLSEEAPGAYKNIEAVADAACRAELAAKTARVRPLACIKG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcggatttccgaacttcgacgcatcgacggatggatctgggaggttccccgtacgggg
gccatgcgtgtcccaggtcgcatctacgcggacaagcgcctgattgaggatatggaagac
acggtgttggcgcaggtcaaaaacgtggccagcctgccgggaatcgtcacggccagcttc
gccatgcccgacgcccactccggctacggcttccccatcggcggggtggccgccttcgat
cccgacaccggcgtcgtttcagcgggcggggtggggttcgacatcgcctgcggggtgcgc
accctggtgagcaaccttttcgccgatgatctggccggtcgcgtcccggccctggccgat
gcgctgttctcgcgcatcccggccggggtgggcagcaccggggccgtacgcctgacggcc
ggggaactggacgccatgctggccgggggggcggtctgggcggtgtcccgggggtttgga
gaaaaggccgacctggatcgcatcgaagagcggggccgtatggacggggccaggccggag
atggtttccgaggccgccaaggcccgccagaaagaccagatgggcaccctgggggccgga
aaccactatctggaagtgcaggtggtggaggaaattttcaacgacgcggccgcagggctg
tacggcctgcatccgggacaggtggcggtcgccatccactgcggctcccgggggctggga
caccagatcggcacggactatctgaaacgcatgcacgaccacgccgccaaaaccggggtg
tccttcccggaccgggaactggcccacgcgcccatcgcttcggatctggggcaacgctat
ctgggggccatgcgctcgggcatcaacgccgccctggccaaccgccagatcctcacccac
atggtccgcgaggtgtttgcggagatgtttcccggctccaggttggcgctgctctacgac
gtgtcccacaacacctgcaaggctgagacccacatggtggacggcgtcccacggctgctg
ttcgtgcatcgcaagggggccacccggtcgcttggtcccgggcatccggacctgccgccc
gggcttgccgccgccggtcagccggtgctggtgggcggcagcatgggcacggcctcgttc
atcctctccgggaccgccgcagcggaaacgcgcgccttcgcctcggcctgccacggcgca
gggcgggccatgagccgaaaacaggccgcccggcatttcaagccccgcacggtactggaa
gacctggagcacatgggtgtcgccgttcgggcccacgacttccggggactgtccgaagag
gcccccggggcctacaaaaacatcgaggccgtggcggacgcggcatgccgggcggaactg
gccgcaaagaccgcccgggtgcgccccctggcctgcatcaaaggctga
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