Desulfolutivibrio sulfodismutans: GD606_04330
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Entry
GD606_04330 CDS
T06784
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dsd
Desulfolutivibrio sulfodismutans
Pathway
dsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GD606_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsd03019
]
GD606_04330
03009 Ribosome biogenesis [BR:
dsd03009
]
GD606_04330
Enzymes [BR:
dsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GD606_04330
Messenger RNA biogenesis [BR:
dsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GD606_04330
Ribosome biogenesis [BR:
dsd03009
]
Prokaryotic type
rRNA processing factors
GD606_04330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
QLA11559
LinkDB
All DBs
Position
complement(900548..902008)
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AA seq
486 aa
AA seq
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MSKIVKRKKKMFISVLPGEQVEVALAEDGVLTEYYVEMVHQVKTRGNIYKAKIHNIDPAL
QAAFINYGAERNGFLQIDEVHPEYYLLVQGPERKAKYPPIQKALKKNQEVLVQVVKEPTG
SKGAFMTTYLSLPGRFFVLTPGREQRGVSRKIEDEEERKRLKEAISGLKLDEGLGIIVRT
AALGQSKSALERDLSFLKRLWKEVRQKGTQAATPSLVYQELDLSARAVRDYLTDDVAEVW
VDEPETAKKVADMASLVFPRRPGIVKQHTDMDLALWDRFNLRRYIEQLYSREVTLPSGGR
LVFDQGEALTAVDINSGKIGGESNFREMALKTNVEAAEEIARQLRLRDIGGQIVIDFIEM
KDRKHVAEVEKSLRAILKTDRARTDVGKMSHFGLLEMVRQRIGSSAVSITTEPCPCCKGA
GTRRNLEWQSMAVLKELYRVLRKNGAPETVPCKVSAELAVYLLNQKRDRLSGFEAEFKKK
IAIIIE
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatcgtcaaacgcaaaaagaagatgttcatcagcgtgctgcccggcgaacag
gtcgaggtggccctggccgaggatggcgttctcaccgaatactatgtggagatggtgcac
caggtgaaaacccggggcaacatctacaaggccaaaattcataacatcgacccggccctg
caggccgcgttcatcaactacggggcggagcgcaacggctttttacagatcgacgaggtg
catcccgaatactatctcctcgtccagggaccggagcgcaaggccaagtatccgcccatc
cagaaggccctgaagaagaaccaggaggtgctggtccaggtggtcaaggagcccacgggc
tccaagggcgccttcatgaccacctacctgtccctgcccggacgttttttcgtgctcacc
ccggggcgcgagcagcgcggggtgtcgcgcaagatcgaggacgaggaggagcgcaagcgc
ctgaaggaggccatttccggcctcaagctggacgagggcctgggcatcatcgtgcgcacc
gccgcccttgggcagtcaaaaagcgccctggagcgcgacctgtcttttctgaaacgcctg
tggaaggaagtccgccagaagggcacccaggccgccaccccgagcctcgtctatcaggaa
cttgatctttcggcccgggccgtgcgcgactatctgaccgacgacgtggccgaagtctgg
gtggacgaacccgagaccgccaaaaaggtggccgacatggcttccctggtctttccgcgc
cgtcccggcatcgtcaaacagcatacggacatggacctggccctgtgggaccgcttcaat
ctgcgccgctacatcgagcaactctattcccgcgaggtcaccctgcccagcggcggccgc
ctggtcttcgaccagggcgaggccctgaccgccgtggacatcaactccggcaagatcggc
ggtgaaagcaatttccgggagatggcgctcaagaccaacgtggaggccgccgaggagatt
gcccggcaactgcgcctgcgcgacatcggcgggcagatcgtcatcgatttcatcgagatg
aaggatcgcaagcatgtcgccgaggtggaaaaatccctgcgcgccatcctcaagaccgac
cgtgcccgcaccgacgtgggcaagatgtcgcatttcggccttctggagatggtccgccag
cgcatcggctcctcggccgtgtccatcaccaccgagccctgcccttgctgcaagggggcc
ggaacccggcgcaacctcgaatggcagtccatggccgtgctcaaggaactctaccgggtg
ctgcgcaaaaacggcgccccggagaccgtgccctgcaaggtttcggccgaactggctgtc
tatctgctcaaccagaaacgcgaccggctctcgggatttgaagccgaattcaagaaaaaa
atagccatcatcatcgaatag
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