Desulfolutivibrio sulfodismutans: GD606_08000
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Entry
GD606_08000 CDS
T06784
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dsd
Desulfolutivibrio sulfodismutans
Pathway
dsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GD606_08000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsd03019
]
GD606_08000
Messenger RNA biogenesis [BR:
dsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GD606_08000
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Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QLA12219
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Position
1701224..1702882
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AA seq
552 aa
AA seq
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MSQSPSVTLYPLGGLGEIGLNCMVMVSGDDMVIIDCGLMFPDDSLFGIDVVIPRFDFILA
NKHKLRGIVVTHGHEDHIGALPWLLPYVDVPVYGSPLTLALVGKKLEEHNLKDFVTLTPV
AKNQRLELGVFAFTFIEVCHSIVHGYGLGIETPAGKIVHSGDFKIDRNPMDGHITDLDAF
ARFSADGVRLLMSDSTNVERDGFSLNEREIKGALSDLFHKATGRILVTLFSSHIQRMQEV
FELAHDTGRKVAISGKSLFSNTEIAKELGYLRIPPDSTCTLDDLPGMPDDKVVLLVTGSQ
GEPLSALSRLATGEHRQLRVHPGDTVLLSSRFIPGNVRAITRLINRLYKLGAEVLYENVQ
AIHASGHAYREELGIMLDTVKPKFFIPVHGEYRHLVKHCRLAVSRGVAPERALVIEDGNP
VTLFADGGIRLEDAISVEHIYVDGKGVGDVGQSVLKERALLAGEGLVIVVMVVDEKTGEV
TLGPNIMSKGFVFEQQYSHVLEDAKCIVWDIFENIPPGNPELLKERIRSSLRRFFRKILE
RDPVVVPLVITL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgagccagagcccctccgtcaccctctatcccctgggcggcctgggggaaatcgggctc
aactgcatggtcatggtcagcggtgacgacatggtcatcatcgactgcggcctcatgttc
cccgacgattccctgttcggcatcgacgtggtcatcccccgtttcgacttcatcctggcc
aacaaacacaaactcaggggcatcgtggtcacccacggccacgaggaccacatcggggcc
ctgccctggcttctgccctacgtggacgtcccggtctacggctcgcccctgaccctggcc
ctggtgggcaagaagctggaagagcacaacctcaaggacttcgtgacgctgaccccggtg
gcgaaaaaccagcgccttgagcttggggtcttcgccttcaccttcatcgaggtctgtcac
tccatcgtgcacggctacggcctgggcatcgagaccccggccgggaagatcgtgcattcc
ggggatttcaagatcgaccgcaaccccatggacggccacatcacggacctggacgccttc
gcccggttcagcgccgacggcgtccggctgcttatgtccgattccaccaacgtggagcgc
gacggcttctccctcaacgaacgcgagatcaagggcgccctgtccgacctcttccacaag
gccacgggccgcatcctggtgacgcttttttccagccacatccagcgcatgcaggaggtc
ttcgagctggcccacgacaccgggcgcaaggtggcgataagcggcaagagccttttttcc
aataccgagatcgccaaggagctcggctatctgcgcatccccccggactccacctgcacc
ctcgacgatctgcccggcatgcccgacgacaaggtggtgctcttggtcaccggctcccag
ggcgagcccctgtcggctttaagccgcctggccacgggcgagcatcgccagcttcgggtg
caccccggggacacggtgcttttgtcctcgcgctttattcccggcaacgtgcgggccata
acgaggctcatcaaccgcctctacaagctcggggccgaggtgctctacgaaaacgtccag
gccatccacgcctcgggccacgcctaccgcgaggaactgggcatcatgctggacacggtg
aaacccaagttcttcatcccggtgcacggcgaataccggcatctggtcaagcactgccgc
ctggccgtgtcgcgcggggtggccccggagcgggccctggtgatcgaggacggcaacccc
gtgacccttttcgccgacggcggcatccgcctggaggacgccatctccgtggagcacatc
tacgtggacggcaagggcgtgggcgacgtgggccagagcgtgctcaaggagcgggcgctc
ctggcgggcgaggggctggtcatcgtggtcatggtggtggacgaaaagaccggcgaggtc
acgcttgggcccaacatcatgtccaagggattcgtcttcgagcagcagtacagccacgtt
ctggaagacgccaaatgcatcgtctgggacatcttcgagaacatcccgccgggcaacccg
gaactgctcaaggagcgcatccggtcgtcgctgaggcgttttttccgcaagatcctggaa
cgcgatccggtggtcgtgcccctggtcatcaccctttga
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