Desulfolutivibrio sulfodismutans: GD606_17365
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Entry
GD606_17365 CDS
T06784
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dsd
Desulfolutivibrio sulfodismutans
Pathway
dsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GD606_17365 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsd03019
]
GD606_17365 (rnr)
03016 Transfer RNA biogenesis [BR:
dsd03016
]
GD606_17365 (rnr)
Enzymes [BR:
dsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GD606_17365 (rnr)
Messenger RNA biogenesis [BR:
dsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GD606_17365 (rnr)
Transfer RNA biogenesis [BR:
dsd03016
]
Prokaryotic type
tRNA degradation factors
GD606_17365 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
WHD_TBPIP
S1
OB_RNR_1st
DUF4777
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QLA14570
LinkDB
All DBs
Position
3843297..3845666
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AA seq
789 aa
AA seq
DB search
MDVSPAAVIRLFRERKRPLSDNEVVDGLRAGRVRRQQVRDILDDLVEEGRLIRIDRAYGL
TESMNLMVGRLEIQRSGVGYVIPDDKRRKDLFISQRDMGDAWHGDRVAAAVTRERTGKNH
EGRVARILERGHNAFPCRVIKRMGKDLFLCRPTDPRQPMSFMADYRPAAGGKEPSLEDII
TVTAGEKLEYRIYSGSATALLGPQRDAAVQEKLVKINHEVPSTFPRRTLAEAGALPEEPG
EADFAGRQDLRKVPFVTIDGAKARDFDDAVHVEKISRGYRLRVAIADVSHYVPEGSALDK
EALERGNSYYFPQSVEPMFPERLSNGLCSLNPHVPRLAMVADMKFSDKGIIRESVFYTAV
IQSAARLTYAQVNQGLLLGDEEARKTMAPVMPMLEKAEKLARLLRGLRQERGTLDFDLPE
PEIHFNLDGEPVDIRPRVRHFGHQIVEEFMIAANEAVARFLTEQETPLLYRIHPDPDPAK
LEALFKLLGTTSLATSLPAEPGPGDLNLMLRAAAETDLDFLVSRLALRTMMQASYSPRHE
GHFGLASVCYCHFTSPIRRYADLIVHRAIKKALAGEGPGWISPIKLQKAAEHLSRRERVA
MEAEREILKRITVLFLEDKVGQEFTGVIGSLADFGFWVELKEVMAEGMVRLSTITDDYYG
FFPERQELLGERTGRAFRLGQTITVELMDVGIDRLEVNLRLLEGGEMGEPGGRKGKPRAA
GSSKSGRSGRSGRSGGSGEQGKSTKSKRSKKTSAAPGAGAAPRTAQAAESGDAPKRSSSS
RRRGRRRKR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcagcccggcggcggtgatcaggctttttcgggaacgcaaaaggcccctgtcg
gacaacgaggtggtggatggccttcgggcgggccgggtgcgccgccagcaggtgcgcgat
atcctggacgatctggttgaggaaggacggctgattcgcatcgaccgggcctacggcctg
accgaaagcatgaatctgatggtcgggcgcttggaaatccagcgttccggggtgggctac
gtcatccccgacgacaagcgccgcaaggatctgttcatctcccaaagggacatgggcgac
gcctggcacggcgaccgggtggccgccgccgtgacccgggagcgcaccgggaaaaatcat
gagggccgggtggcccgcatcctcgagcggggccacaacgcctttccgtgccgggtgatc
aaacgcatgggcaaggatctttttctgtgccgtcccacggacccccgccagcccatgagc
ttcatggccgattaccgccctgcggccgggggcaaagagccctccctggaggacatcatc
acggtcacggccggggagaagctggaataccgcatctattccggctcggccacggccctt
ttgggccctcagcgcgacgccgccgtgcaggagaagctggtcaagatcaaccacgaggtg
ccctcgaccttcccccggcgcaccctggccgaggccggggcccttcccgaagaaccgggc
gaggccgatttcgccggtcgccaggatctgcgcaaggtgcccttcgtgaccattgacggg
gccaaggcccgggacttcgacgacgccgtgcatgtggagaaaatttcccggggctaccgc
ctgcgggtggccatcgccgacgtgtcccactacgtgcccgagggttcagccctggacaag
gaggccctggaacgcggcaactcctactatttcccccagtccgtggagcccatgttcccc
gagcggctctccaacgggctgtgcagcctcaatccccatgtgccccggctggccatggtg
gcggacatgaaattctccgacaaggggatcatccgggagtccgtcttctatacggcggtg
atccaaagcgcggcccgcctgacctatgcccaggtgaaccaggggcttttattgggcgac
gaggaggcgcgcaagaccatggccccggttatgcccatgctggaaaaggccgagaagctg
gcccggctgctgcgcggcctgcgccaggagcgcggcaccctggacttcgatctgcccgag
ccggaaatccatttcaatctcgacggcgaacccgtggacatccggccccgggtgcgccat
ttcgggcaccagatcgttgaggaattcatgatcgcggccaacgaggccgtggccaggttt
ctcacggaacaggaaacgccccttttgtaccgcatccatcccgatcccgacccggccaag
cttgaggccctgttcaagcttttgggaaccaccagcctggccacgtcgcttccggccgag
cccggcccgggcgacctgaacctgatgttgcgcgcggcggcggagacggacctggatttt
ctggtcagccgtctggccctgcgcaccatgatgcaggcctcctattccccgcgccatgaa
gggcatttcgggctggcctcggtctgctactgccatttcacctcgccgattcgacgctat
gccgaccttatcgtccaccgggccatcaaaaaggccctggccggagagggcccgggctgg
atcagcccgatcaagctccagaaggcggccgagcacttaagccgccgggagcgggtggcc
atggaggccgagcgcgagattttaaagcgcatcacggtgctctttctggaagacaaggtg
gggcaggagttcaccggggtcatcgggtcgctggccgacttcgggttctgggtggagctc
aaggaggtcatggccgagggcatggtccggctgtccaccatcaccgacgactattacgga
ttttttcccgagcgccaggagcttttgggcgaacgcacggggcgggccttccggctgggg
cagaccatcaccgtggagctgatggatgtgggcatcgaccggctggaggtcaatctgcgg
ctgctcgagggcggcgagatgggagagcccgggggcaggaagggcaagccccgggccgcc
ggatcctccaagtcggggcgttctggccggtcgggccggtcaggcggctcgggagagcag
ggcaagtcaacgaagtcgaagcggtcgaaaaaaacgtccgcagcgcccggcgcaggtgcc
gcgccaaggaccgcacaggcggccgagtccggcgacgcgccgaagcggtcgagctcgtcg
cgccgcaggggccggaggcggaagcggtag
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