Desulfolutivibrio sulfodismutans: GD606_17900
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Entry
GD606_17900 CDS
T06784
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dsd
Desulfolutivibrio sulfodismutans
Brite
KEGG Orthology (KO) [BR:
dsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsd03016
]
GD606_17900
Enzymes [BR:
dsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GD606_17900
Transfer RNA biogenesis [BR:
dsd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GD606_17900
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QLA14003
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Position
3971354..3973417
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AA seq
687 aa
AA seq
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MQQFPGSGCIVEFMHGNEPQLAWVLEETGGRLRLYTINKREMKLPAARVLPWVGPCDASV
RERGGMLERLSACETRRAKAASEVDAMEIWELAQGEVSEETVGWFAGLVWESPGFDQVAG
LGRALLACKTHFKFHPPKFEVYPAEVVERRLVEQAAALERERVVTAGQGFFKDLWTAWAS
GTGRDSARLAARLDPEAADKLRELLLGLVADPENADLAVLWGTLRKGLPEHPFLPLVLAE
QWGVVPPHYNYLLDQAGYEAGDGWSGRFDGEIEAMRQACADTIRDPEPIPFVSVDSPTTR
DIDDAFHVEPLPDDGFLLRLALADPASGWRFDGPLDRAVARRASSIYLPEGTSHMMPEAF
ASDLYSLVEASPRPALIMEWNLDAAGAPRDFSMRSSVAAVSNRTYADVEAELATGAPGQS
VALAARLSGLLRGRRVAAGAAIIERSEPDVVLVGPPDDPQVELAPSDAYPNAQLLVSELM
ILANSSAAAFAAVQGFPLLFRTQDAVLPKELAGVWSRPEDIHHVVKHLPPTSLELAPRPH
AAIGAKAYATVTSPLRRYVDLVNLAQLRQFLAAGRPKWSRAELEQRLPDICAQTEAAGRI
QRFRPRYWKLLHIRQQCRVRTWTGVVVEAAGAFVTLALPDFQIYVRANREQLGEKIRPGQ
PFALRLGKVDPLTNELRVLEATEMEAE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagtttcccggctcggggtgtatcgtcgaattcatgcacggcaacgagccgcag
ttggcctgggtactggaggagacgggcggtcggctgcgcctgtacacgatcaacaagcgt
gagatgaagctgcctgcggcccgggtgttgccgtgggtggggccgtgcgatgcgtcggta
cgcgagcgtggcggaatgttggagcggctctccgcctgcgagacaaggcgggccaaggcg
gcctcggaagtggacgccatggagatatgggagctggcccagggcgaggtaagcgaggag
acggtgggctggtttgccgggcttgtgtgggagtcgccgggctttgaccaggtggcgggc
ctggggcgggcccttttggcctgcaagacgcatttcaaatttcatccgccgaaattcgag
gtctatccggccgaggtggtggagcggcggctcgtggagcaggcggcggcgcttgaacgg
gagcgggtggtcacggccgggcaggggtttttcaaggacttgtggacggcctgggcctcg
ggaacgggccgggactcggccagactggcggcccggctcgaccccgaggcggcggacaag
ctgcgcgagcttctgcttgggctggtggccgatccggagaatgccgatctggcggtgctg
tgggggacgctgcgcaagggcctgcccgagcatccctttttgcccctggttttggccgag
cagtggggagtggtgccgccgcactataattatctcctggatcaggccggatatgaggcc
ggcgacggctggtccgggcgttttgatggcgagatcgaggccatgcgccaggcctgtgcg
gacacgatccgcgaccccgagcccatccccttcgtcagtgtggattcgcccacgacccgg
gacatcgacgacgcctttcatgtcgagcccctgccggacgacggatttttgctgcgcctg
gccttggccgatccggcctcggggtggcgtttcgacggccccctggaccgggccgtggcc
cgccgggccagcagcatctatctgcccgagggcacaagccacatgatgcccgaagccttt
gcctccgatctgtattcgcttgtggaggcgtcgccgcgtccggccctgatcatggaatgg
aacctggatgcggcgggcgcgccccgggatttttccatgcgttcttccgtggcggcggtt
tccaaccggacctacgccgatgtggaggcggaactggccacgggcgcgccgggccaaagc
gtggccttggctgcacgcctgtccggtctgttgcgcggtcgccgggtggccgccggggcg
gccatcatcgagcgcagcgaacccgatgtggtcctggtcgggccgcccgacgacccgcag
gtggagcttgcgccttcggatgcctatcccaacgcccagcttttggtcagcgaactcatg
attctggccaattcctcggccgccgcctttgccgccgtgcaggggtttccgcttttgttc
cgcacccaggacgccgtgttgcccaaggagttggccggggtctggagtcgccccgaggac
atccaccacgtggtcaagcacctgccgcccaccagcctggaactcgccccccggccccac
gcggccatcggggccaaggcctacgccacggtgacctcgccgcttcgccgctatgtggat
ctggtcaacctggcccagttgcgccagtttctggccgccggaaggcccaaatggtcccgg
gccgaactggagcaacgcctgccggacatctgcgcccagaccgaggcggccgggcgcatc
cagcgttttcggccccgctattggaagctgttgcacatccggcagcagtgtcgggtcagg
acgtggaccggcgtcgtcgtggaggccgccggggccttcgtcaccctggcgcttccggat
ttccagatctacgtgcgcgccaaccgcgaacaacttggcgaaaaaattcgtcccggacag
cccttcgccttgcgcctgggcaaggtggacccgctgaccaacgaactgcgggtgctggaa
gccacggagatggaagcggaatag
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