Drosophila sechellia: 6605841
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Entry
6605841 CDS
T01064
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dse
Drosophila sechellia
Pathway
dse03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6605841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dse03041
]
6605841
Enzymes [BR:
dse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6605841
Spliceosome [BR:
dse03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
6605841
Complex C
U5 SnRNP specific factors
6605841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
Motif
Other DBs
NCBI-GeneID:
6605841
NCBI-ProteinID:
XP_002030655
UniProt:
B4HIL1
LinkDB
All DBs
Position
3L:complement(15574888..15581957)
Genome browser
AA seq
2142 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVCSLVGKLDGTRMGDRYQRTK
PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDVDSLLGAVTDERFALLVNLGKKIT
DFGSDAVNALTAAPNNEEQIDETYGINVQFEESEEESDNDMYGEIRDDDVQDEGEEARID
HTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYKDAMVSQSKAADVLKILKD
AADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREKMRGNSA
LAKILRQLDTGKSEDQDEGEARGSKRGKGDAEDGGAAAAGQVAGVRQLLELEEMAFTQGS
HFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPVFDGFKT
LNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIY
VAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKG
GERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQD
VATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQ
VLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPY
GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGR
WVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDM
LNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTA
ACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFSL
SSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSD
MVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIA
KKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRV
ELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFE
PLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPISALRQPRFESF
YSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVYLV
SEEALADLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQ
RKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVA
QWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHNATRIATMSKPVYNAILKYSAHKPVIV
FVSSRKQARLTAIDVLTYAASDLQPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLH
EGLSASDHRLVEQLFDSGAVQVAVVSRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPI
TDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVV
TKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKC
ISVEDDMDTLPLNLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVR
HHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLGPELQGDTEQIL
SKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTE
KKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVN
VVVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVA
PSPGKHDYTLYYMSDSYLGCDQEYKFSIEVGDFQSESESESD
NT seq
6429 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgccgcagcacgtcagctgcagtacgagtacaaggcgaactccaatcttgtg
ctgcaagccgatgtccgactcatcgaacgtccgcggcgcgatgaggccactggcgaggtg
tgttccttggtgggaaagctggacggaaccaggatgggagatcgttatcagcgaacgaag
ccggagaaaacggaggagcgcaaggtgaaacgtcagaagcgcgacgaagcccagtacgat
ttcgagcggatgaagggcgccactctgctctctgagggcattgacgagatggtgggcatt
gtgtatcgacccaagacccaggaaactcgacagacctacgaggtcctgctcagtttcatc
caggaggctctgggggatcagcccagggatatcctgtgcggtgccgctgatgagattctg
gctgtcctcaagaacgatcgcttaaaggatcgggagcgaaagaaggatgtggatagtttg
ctgggcgcagttacagatgagcgattcgctctgctggttaacctgggcaaaaaaatcaca
gactttggcagtgatgccgtgaatgctttgactgctgctcccaacaacgaggagcagatc
gatgaaacttacggcatcaatgtccagtttgaggaatccgaggaggagagcgacaacgac
atgtatggtgagattcgcgacgatgatgtccaggatgaaggagaggaggcccgcattgat
cacacactgcatgcagagaatctggccaacgaggaagccgcaaataatgtaaagaaagag
cgctccttgcatcctctggacatagatgcgtattggttgcagcgttgtctgagcaagttc
tacaaggacgccatggtgtcgcaaagcaaagccgccgatgtgctgaagatcctgaaagat
gccgccgacgatcgcgattgcgaaaatcaattggtgcttctgctgggctacgattgcttt
gacttcattaagcaattgaagcttaaccggcagatggtcctgtactgtaccatgctcgcc
tcagctcaaacagacagcgagcggcaaaggattcgcgaaaagatgcgcggaaattctgcg
ttggccaaaatccttcggcaattggatacgggaaagtcagaggatcaggacgaaggcgaa
gcacggggaagcaagcgtggcaaaggcgatgcagaggatggtggagcggcggctgccggg
caggtggccggtgtgcgacagctactcgagttggaagaaatggcattcactcaaggatct
cactttatggccaacaagcgctgtcagctacccgacggctcctacaggaaacaacgtaag
ggctacgaggaggtgcacgtgccggcactgaaacccgtgccatttgatgccaatgaggaa
cttcagcctgtggacaagctcccgaaatatgtccagcctgtgttcgacggtttcaagacc
cttaatcgtatccaaagtcgtttgtacaaggccgctctggacagtgatgagaatatgctg
ctgtgcgcccctactggagctggtaaaactaatgtggccctgctaaccatgatgcgggag
attggaaagcacatcaacgaagatggtaccatcaacgcgcaggatttcaaaatcatttac
gtggctcccatgaaatcgctggtgcaggaaatggtgggcaattttggacgacgccttgct
tgctataatctgacggtctccgagttgactggagatcaccagctgactagggaacagatc
gccgccacgcaggttattgtgtgcacaccagagaagtgggatatcatcactcgaaaggga
ggagagcgtacttttgtgagcttagtgcgattggtaatcatcgatgagattcacttgctc
cacgacgagcgtggtccggtgcttgaggccctggtggcacgtacgataaggaatattgaa
actacgcaggaggaggtgcgattggtgggcttatctgccacactgcccaactatcaggac
gtggccaccttcctacgcgtaaagcccgataaaggcctcttctactttgataacagctat
cggcctgtgtccctggagcagcagtatatcggtgtgacggagaagaaggccctaaagcgg
ttccaggtgatgaacgagattgtttatgagaagaccatggagcatgctgggcgcaatcag
gtcctggtcttcgtacactcgcgcaaggagactggaaaaacggccagggccgtgagggac
atgtgcctggagcaggatacccttggtagctttcttaaggaaggatcagcaagtatggaa
gtgctgcggactgaagccgaacaagtaaagaacacagagctaaaggagttactgccctac
ggctttgccattcatcatgctggaatgacccgcgtcgatcgtactttggtggaagatcta
ttcgctgatcggcacattcaagttttggtttccaccgccactctggcttggggtgtcaat
ctaccagctcacactgtaatcatcaagggcacgcaggtatacaatccggaaaaaggacgt
tgggtggagctgagtgctttggatgttctgcagatgttgggtcgtgctggacgaccgcag
tatgataccaagggtgagggtattcttataaccaatcacagtgagttgcagttctatctc
tccttgctcaaccagcagttgccgattgagtcccaattcatctctaagcttcctgacatg
ctcaatgcagagattgtgctaggaacggtccaacatctccaggatgcagttaactggttg
ggctacacttatctgtacattagaatgttgaggaatcccacgttgtacggagtttcccat
gatgccatcaaggctgatcctctgttggagcaacatcgtgctgatctcctgcacaccgca
gcttgctgcctggagaggagtggtctcattaaatacgatcgaaagacgggacacttccag
gttactgatctgggacgcattgcctctcactattacctaacccatgaaaccatgctgact
tacaaccagctgctcaagcaaacgcttagtgagattgagttgttccgcgtattctcccta
tcctcggaattccggcatatttccgtccgagaagaggaaaagttggagttgcagaagctc
atggaacgagtgcccattcccattaaggagtccattgaggagcatagcgccaaggtgaat
gttttgctccaagcctatatctcacagttgaaactggagggctttgcattgatgtcggac
atggtgttcattacccaatccgctgcccgtttgatgagagccatttttgaaattgtactg
acccgcggatgggctcaattggcggacaaaacgttaacgctctgcaagatgatcgacaga
aggatgtggcaatcgatgacaccacttaggcagttcaagaagatgcccgatgagattgcc
aagaagctggagaaaaaacacttcccttggggcaggctttacgatctagagccacatgaa
cttggtgagctgattagagtgcccaagctaggaaagactattcacaagtttgtgcaccag
ttccccaaattggagctctccacgcacattcaacccataacaaggggaactctgagagtg
gaactcacaattacacccgatttccaatgggatgagaaggtgcatggccaatcggaaggt
ttctgggttttgattgaagatgtcgactcggaactcattctccatcacgagtttttcctg
ctgaagcagaagtattcccaggatgagcaccagcttaagttctttgtgcctgtctttgaa
cctctgccaccgcagtacttccttcgcattgtctcagaccgttggataggtgcagagacc
caattaccagtttctttccgacacttgattctgcccgagaagaatatgccacctacggag
ctgttggatctccaaccgcttcccattagtgcactccggcagccgagatttgaatcgttt
tattcgcaacgcttcccgcaattcaatcccattcagacacaggtcttcaacgcagtctac
aatagtgatgagaatgtctttgttggagcaccaactggatccggaaagatgactattgca
gagtttgccatcatgcgcttgttcactacccaatccgatgcacgatgtgtctatttggtg
tcggaggaggcattggcggacttagttttcgcggattggcatagcaaatttggatcgctg
gatataaaagtggttaaattgaccggcgaaactggaaccgatcttaagctgatagccaag
ggacagctggtgatcactactgcggataagtgggatgtgttgtcgcgcagatggaagcag
aggaagaacgtacaactggtgaacctgttcattgtggacgaactgcagttggtgggtggc
gaagaaggtcctgttttggaaattgtatgctctaggatgcgatacattagctcgcagatt
gagaaacagatcagaatagtggcgttgtctgcatcgctaacggatgccagggatgtcgcc
cagtggctggggtgtaatcccaatgccactttcaatttccaccccagcgtgcgtcccatt
ccgttggagctgcacatccaaggctataatgtaacccacaacgccaccagaattgccacg
atgtccaagcctgtttacaatgccatcctcaagtacagcgcccacaagccggtgattgtg
ttcgtctcatccagaaagcaggccaggctcactgcaattgatgttctgacctacgcagca
tcggatttgcaacccaatcgattcttccatgctgaggaggaggatatcaagccgttcctc
gaacgaatgacggataaaactttgaaggagacattagcgcaaggagtggcctatcttcat
gagggcctatccgcctcagatcatcggctggtggagcagctgtttgactctggcgccgtg
caagtggctgttgtctccagggatctttgctggggcatgagcatctccgcccacttggtg
atcatcatggacacacaattttacaacggtaagaatcattcgtatgaggactatcccatt
accgacgtgctgcaaatgattggtcgagccaatcgacccaacgaggatgcggatgccaag
tgcgtgctgatgtgccagagcagcaagaaggacttctttaagaaattcatcaacgagccg
ctgcccattgaaagtcatctggatcatagaatgcacgatcactttaacgccgaggtggtc
accaagacaattgagaacaaacaggatgctgttgattatctcacctggacgttcctctac
agaagattgacccaaaatcccaattactacaatctgcagggcgtcacgcatcgccatctc
tccgaccatctttccgagttggtggagaatacgctgagcgatctagaacagtcgaagtgt
attagcgtggaggatgatatggacactttgccactcaatctgggcatgattgctgcctac
tattacatcaactatacaactatcgagctcttcagcttgtcccttaacagcaaaacaaaa
gtgcgtggcctgctggaaattatttcatcggcagctgagtacgaggatgtggtggtcagg
catcatgaggagcaggttctgcgcacgctgtctcagcgactgcccaacaaactcacagga
cccaatgaaacggctccaaaattcaatgatcctcacatcaagaccaatttgctgcttcag
gctcatctttcgcgattgcaattgggacctgaactgcaaggcgatacggagcagatactg
agcaaggccatccgcctcattcaggcctgtgtagatgtgctgagttcaaatggctggcta
tcgccggctgtggctgccatggagctggctcagatggtcacgcaggccatgtggagcaag
gactcgtacttgaagcagttgccgcactttagtcccgagattgttaagcggtgcacagag
aagaaaatcgaaactgttttcgatatcatggaactggaggacgaggatcgcactcgcctg
ctgcagctctccgatttacaaatggccgatgttgctcgattctgcaaccggtaccccaac
attgagctgaactatgaggtggtggacaaggatcgtatcaactcaggatcaaccgttaat
gtagtggttcaactggaacgtgaggatgaggtcactggcccagtcattgctccattcttc
ccgcagaaacgcgaagaaggatggtgggtcgtcataggcgatcccaagaccaactccctg
ctctccatcaaacggctcacgctgcagcaaaaggcaaaggtcaagctggactttgtggca
cctagtccgggcaaacacgactacactctgtactacatgagcgattcctatttgggttgc
gatcaggagtacaagttttccatcgaagtgggtgacttccagtcggaaagcgagagcgag
tcagattag
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integrated database retrieval system
