Drosophila sechellia: 6608257
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Entry
6608257 CDS
T01064
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
dse
Drosophila sechellia
Pathway
dse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6608257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dse03019
]
6608257
Enzymes [BR:
dse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
6608257
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6608257
mRNA degradation factors
3'-5' decay
Pan complex
6608257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
6608257
NCBI-ProteinID:
XP_002033001
UniProt:
B4HSB9
LinkDB
All DBs
Position
2R:5175998..5180905
Genome browser
AA seq
1241 aa
AA seq
DB search
MDYVYCGTDPIGASEDILSVYDAGSAPGNGHFSPSFNGFNIGTTDPEYVELVPVLADGGE
HFGVSSVAFDDYEELLWMGNQGGHVTSYYTNSMQKYTSFQVHATDIVRDISTLDSGVLAL
TQTSLRHQIRRGLPKFTFKSNNMKEMVSMLQLSPHRLVMAGLQDELIDFDLRTLKETRIE
HVGAGGCTVLRKNSRYLFAGDQLGTVTLRDLNSLSVQHTIKTHTNILSDFSVQGNLLISC
GYSGRQNNLAIDRFLMVYDLRMLRLIAPIQVMIDPLMLKFLPSLTSRLAVVSSYGQVQLV
DTVELSEPRVSMYQINTNGSQCLSFDISSSSQAMAFGDQSGHINMIAAVQTPQPQFNLYS
RSTEFADVVPQLPMVSITDTNFPLSSVMLPHLTTGTQWFSDWPDELLRYRYHRPKTIDPE
VLSNMKMQGPIGYSPNPRTARRNQIPYVIEQGGVCSSNGNGTTAATKAENGVKIIPRRYR
KVELKYTKLGTQDFDFDQHNQTCFAGLEATLPNSYCNAMLQILYFTDALRVKLLEHSCIK
EFCLSCELGFLFNMLDKSTASSPCQASNFLRSFRTVPEASALGLILTDRSSNVNLISLIQ
NWNRFILHQMHYEIFDSSKNASTYSGSVQTSTNAENTATSETSGSSDLYDSISDENTKED
DRERSKINAETDISKIFGTKQICINRCIKCQEEKMKESILLACNMSYPNNIKDSDQYFNF
GTILKRSLSSEKSIQAFCERCKKFSPTNQSVKVTSLPQILSINCGLNNEKDITFLKRQLN
RCSEKTTVDAAASLSTSKPCRYGANCSRSDCHFMHPDRKSPSHTSQPSAVNSSPNGRQKS
WFPLTFTMGINDQGEVQVQTPSDASSGKTEQEEEAEKPPAKGLDNNRMYTLHAVVCQVDD
GTQKNLVSLINVQRPYHTMKLAESADDPQSQWYIFNDFSISPVSPQESVWFTLDWKVPCI
LFYRHVEDDSESASTTSSTVTESEETIPSESSSVSPTNLSNPFLEEIVSPMLGNLSADAT
LKPLQSDEMPQSGDLVAMDAEFVTLNPEENEIRPDGKTATIKPCHMSVARISCIRGQGAD
EGVPFMDDYISTQEKVVDYLTQFSGIKPGDLDANFSKKRLTALKYSYQKLKYLVDVGVIF
VGHGLKNDFRVINIYVPSEQIIDTVHLFHMPHHRMVSLRFLAWHFLGTKIQSETHDSIED
ARTTLLLYKHYLKLQEEKKFANALKNLYERGKQLQWKVPED
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggattacgtgtattgcggcaccgaccccatcggggcctccgaagacatactaagtgtt
tatgacgcgggatccgcgccgggaaacgggcacttctcgcccagcttcaatggattcaac
atcggcaccaccgatccggaatatgtggagcttgtgcccgtgctcgccgacggcggagag
cacttcggcgtttccagcgtggcgttcgacgactacgaagagctgctgtggatgggcaac
cagggcggccacgtcacatcgtactacaccaactccatgcagaagtacacatcctttcag
gtccacgccaccgacattgtgcgcgacatctccaccctggactccggagtgctggcgctc
acgcagacctcgctgcgccatcagatccgtaggggtctgcccaagtttaccttcaaatcg
aacaacatgaaggagatggtgagcatgctgcagctatcacctcaccgtctggtcatggcc
ggactgcaggacgagctcatcgacttcgacctgcgcacgctcaaggaaacccgcatagag
catgttggtgccggcggatgcacggtgctgcgcaagaattcacgttatttgtttgccggc
gaccagctgggaacggtgacgttgcgcgacctcaacagcctaagtgttcagcacacaatc
aagacgcacactaacatcctctcggacttcagtgtccagggaaatctgctaatctcttgc
ggctacagcggaaggcaaaataatctggccatcgaccgcttcctgatggtctacgatctg
cgcatgctgcgcctgatcgcgcccattcaagtgatgattgatccgctaatgctgaagttc
ctgccatcgctgacatccagactggccgtcgtgtccagttacggccaggttcagctggtg
gacactgtggagctcagcgagccgcgagtatccatgtaccagatcaacaccaacggcagc
cagtgcctcagcttcgacatcagctcctcttcacaggccatggcatttggggaccagtcg
ggccacatcaacatgattgctgctgttcaaacgcctcagccgcagttcaatctctactcg
cgaagcacagagtttgcggacgtcgtgccacagctgccgatggtctccattacggacacc
aactttccgctatcgtcggtcatgctgccgcacttgacgacgggcacacaatggttctca
gattggccggacgaactgctgcgctaccgctaccacagacccaagaccattgatcccgaa
gtgctgagcaacatgaaaatgcagggaccgattggatactcgccaaacccgcgcaccgca
cgccgtaatcaaattccgtacgtgattgagcagggcggcgtgtgcagctcgaacggaaat
ggaactactgcggcgaccaaggcggagaacggtgtgaaaatcattccacggcggtatcgc
aaagtcgagcttaagtacacgaagctgggcacccaggactttgacttcgaccagcataat
cagacatgcttcgcaggtctggaggcaacgctaccgaactcctactgcaatgctatgcta
cagatattgtatttcaccgatgcgcttcgtgtgaagctgctggaacactcgtgcatcaag
gagttttgcctgtcctgcgaactggggttcctcttcaacatgctggataagagtaccgct
tcgtcaccttgccaggccagcaatttcctgcgatctttccgcactgtgccagaggcctct
gcactgggattgattctcaccgatcgctcatcgaatgtcaatctaatatcgctaatacag
aactggaaccgattcattttgcatcaaatgcattacgaaatattcgattccagcaagaac
gcatccacctacagcggatctgtgcaaacatcaacgaacgcggaaaacacggccacgtcg
gaaacaagtggctcctcggacctttacgattccataagtgatgagaacaccaaggaggac
gatcgggaacgcagtaagatcaacgcagaaactgacatcagtaagatctttgggactaag
caaatttgtataaaccgatgcatcaaatgccaagaagagaagatgaaggaaagcattcta
cttgcctgcaatatgtcgtaccccaacaacatcaaagatagcgatcagtatttcaacttt
ggcaccattttgaagcgatctctcagctccgagaagagtattcaggccttctgcgagaga
tgtaagaagttttcgccaaccaatcagagcgtgaaggtgacttcgcttccgcaaattctg
tccattaactgtggcctcaacaacgaaaaagacattaccttcctgaagcgccagcttaat
cgctgcagcgaaaagacgactgttgatgcggccgcttccctgagcacaagcaagccgtgt
cgatatggagctaactgttctcgaagtgactgccatttcatgcatccggatcgcaaatct
ccatcgcacacaagccaaccgagtgccgtcaacagttctcctaatggacgacaaaagtct
tggtttcccctcacatttactatgggcatcaatgaccaaggtgaggtccaggtgcagact
ccatcagacgcaagcagtggcaaaacggaacaggaggaggaagcagaaaagccaccagca
aagggcttggacaacaatcggatgtacacgctacatgccgtggtgtgccaagtcgatgat
ggcacccaaaagaacttggtatcgttgataaatgtgcagcggccataccacaccatgaaa
ctggctgaatccgcagatgacccccagagtcaatggtatatttttaatgatttcagcata
tcgcccgtttcgccacaagaatcggtatggttcacattggattggaaagttccttgcata
ctcttctacaggcacgtagaagatgactctgagtctgctagtactactagctcgaccgta
acggaaagcgaagaaaccattccatcagagagcagcagcgtctcgccaacaaatctatcc
aacccttttctagaggaaatcgtgagtcctatgctaggcaacttaagtgcagacgcaacg
ctgaaaccgctgcaatcggatgaaatgccgcagtctggtgatctggtcgcaatggatgcc
gagttcgttacccttaatccggaggaaaatgagattcgcccggatggcaaaacggcgacc
atcaagccatgccacatgagtgtggcccggatttcatgtatacgaggacaaggcgcggat
gaaggagttccattcatggacgattacatatccacccaggagaaggtcgtggactaccta
actcagttttcaggaatcaagcctggcgacttggacgccaacttcagcaaaaagcgactg
actgccttgaagtactcataccagaaattgaaatacctcgttgacgtgggagtaatattt
gtcggacatggtctgaagaacgactttagggtcataaacatctacgttccgtcggagcag
ataatagacacggtgcacctattccacatgccacatcatcgcatggtttccctgaggttt
ctagcctggcattttttgggtactaagattcagtccgagacgcacgattccatcgaagat
gcacggaccactctgctgctctacaagcactatttgaagctgcaggaggagaagaagttt
gccaacgctctcaagaatctttacgagcgcggaaagcagctgcagtggaaggttccagag
gactga
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