Drosophila sechellia: 6608368
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Entry
6608368 CDS
T01064
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X2
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dse
Drosophila sechellia
Pathway
dse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6608368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dse03019
]
6608368
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6608368
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
6608368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_1st
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
DUF4327
TrpP
Motif
Other DBs
NCBI-GeneID:
6608368
NCBI-ProteinID:
XP_002033104
UniProt:
B4HT07
LinkDB
All DBs
Position
2R:complement(5787403..5800154)
Genome browser
AA seq
2508 aa
AA seq
DB search
MCPRLRAVAVKALILAFQPYAMQLFDTKPYVTDSIYDILQFVKEHGLEADRSSLRHLFSV
INFSDLVPSVTVQLQAKLLGIQLERQLHSSSFVSNICYAFDQFFASNQKSLKPVAVADLV
GQVARLTGINKVCECVFALALTHSSYLELKHSARNNLKGSLSELIDSYLGNKGTGPADSG
LREISFDLLQYLLCCLSEYVQPQVEAQFLVKLREEFPRQAVPLVLAPFLYGSTTATIAGA
GASETDAEAEATTNSNSSSFEADALNEVGIEDIYDHLSEIIFTNQGKNNIMDTSWINLIL
EIGYEFTSSVEECKNHLCSRERERAELQSKDVAKIVGLMCRRHSSLLDCNVNLPTPANFW
PGQGQGGGSNSSGSSQTQITPQQQTPGNSNNNDGSDGNSSSDKKDKKETTEATQTWKPDV
FVQALKEVVPQLNWKDVCMELDHPEFVLKDRIGLELLLTILRLATGSNIFPHPECIYRHW
ANTEGQLSLIATMLKNPDLFSFADFVFSQPALDVLKTAPDADNKEISSWKSLHLVEVLLS
IADKGYYTQVHELFKFPAQNCPDVLFLALLNTSPPMTPLRQDLFNQLIPTFLGNHPNSNV
ILASAWSSNNFQLRSNIMNAMSEWYLRGNEFDQVKLSRILDLAQDLKALSALLNARSFLF
IIDLACLASRREYLKLEKWLTDKIREHGEPFMQAIIKVLHRRCPQVINAKVPEDQLPPKQ
AQLLPETVTTMINCLQTCINNCMQPEMVEVIMQMTANVAIMANKARAQQQQQPGLVPPPP
PTILRGHRGMDLPGGIVPPPPQQPFSGNLNAQMFGPGMDPLTNMSNNLAGLNLSGPNGAF
NFGNMLTSPSRLMTPGANPYPLNLMQMPQAPPPPNVGNLGRMLPGGPQQQTPTPTPTAPN
PNNPVMADLQIPVSKEVEDEVNSYFQRIYNHQPNPTLSIDEVLDILQRFKESSNRREQEV
FLCMLRNLFEEYRFFCQYPEKELQITAQLFGGIIDRNLVPTFVALGLSLRCVLDALRKPD
GSKLYYFGVTALDRFRTRLHTYNKYCEHIRSIPHFSDFPPHLIQYVEYGMHGQEPPPQKL
IGLSNTIPSAISSGPGTEPIYRNSSMLGNMPAATPGSGPKSSAAVSHATRMKSIANATNI
DTLLVANQEEKVTVPPEPVQDKTAFIFNNLSQLNIPQKCDEIKEIMTKEYWPWLAQYLVL
KRASMEFNFHTLYYNFLDALKNGEINRFVTKETLRNIKVLLRSDKGVINFSDRSLLKNLG
HWLGMMTLGRNRPILQLDLDLKSLLAEAYHKGQQELLFVVPFVAKILESSAKSRIFRSPN
PWTMGIMYVLGELHQEPDLKLNLKFEIEVLCKTLNLELAKLRPVIYLKDPNRTHLIEQMS
QPKPKQLEPVASAPALPREQQSPAQPPPPPQQQQPPQQQVPPPPSSADVDAQNAAAMMMA
AGGANSTPGSVSSPNLPTDSNQVALPPPEPRYSYVDVNVSNFQLIGQQLVLPPNTPFLHA
NPGIKHIVVNAVERTITDWLQPIVDRSIRIACATTEQIIRKDFALDADENRMRTAAHQMV
RNLAAGMAMITGKDEIARAISQNLHKALLSGLNGMPSMAEIQAAAMQLASENVELVCAFI
QKTSAEKAAAEIDRRLSTDFETRKIAREEGNRFVDAQILTYQQERLPEAVRIKVGAAPAT
LYAVYSEFARSIPGFQQMSDRDIALFVPKPTDLSQPNVFANDDNSMVYGELASKMETFMN
TAIGVPTLQIQASKMHMLLNALIATRRLRDQESAFNLLTRAVEGLTEGLVNMHENMEQMK
MYQNIHLRILGLLNNSFGAPNTERAVTKCFFDIREEVRYNVEAARALITSHFVNLNQFDG
MLRDCMDNGNNYVAISFGIALLERLIMDDRVINIVSDNEFMATVELLGRLTQHRHRYPEC
IVNAIDTLWSGNFNTSSDYSPFNGNDRYLSGASHYIHSGMHHSCDTDDPPGLQEKTEFLL
KDWVALYTQQNQQSTRDARNFGAFVQKMNTYGILKTDDLITRFFRQATHICTDVVYRMFA
EPSLPINQAKNKIFQWIDAFVHLIAMLVRHSGEAGNPTTKINLLNKVLGIVLGTLIKDHE
MRGVSFQQVGYHRFFMMLFMELCSADVILESLMHSIVSAFAYTYHLLNPSVAPGFCFAWL
ELISHRVFLGRILVQIPGQKGWPLYAQLLQDLFKYLAPFLRNTELGKPVQLLYKGTLRVL
LVLLHDFPEFLCDYHFGFCDTIPPNCVQMRNIILSAFPRNMRLPDPFTPNLKVDMLSDSS
NAPKVLSSYIMNIQPPNFKKDLDSYLKARAPVTFLSELRGHLQVTSEPGTRYNMALMNAL
VMYVGTQAIALIRNKNFVPNTSNIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPN
SHTHYFSCAVLHLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFW
DHDFVHCAPEITKLFESVARSCLAKSNVTQQLNMPVVDGEGQEVATIN
NT seq
7527 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcccagattgcgggcagtcgctgtcaaggcacttatattggctttccaaccctac
gcaatgcagctctttgatactaaaccatacgttactgatagtatttacgacatcttgcag
ttcgttaaagagcacggcctggaagcggatcgcagcagcctgcgccacctgttctccgtg
atcaacttcagcgatctcgtgccatcagttacggtccagctgcaggcgaagctcctgggc
atccagttggagcgtcagcttcacagttcctcgtttgtgtccaacatctgctacgctttt
gaccagttcttcgccagcaaccagaagtccctgaagcctgttgcggtagcggatctcgtt
ggccaggtcgcccgactgaccggcatcaacaaggtttgtgagtgcgtctttgccttggcc
ttgacccactcctcgtacctagaactcaagcattctgccaggaacaacctaaaaggtagc
ctcagcgaactgatagactcttacttgggtaataaaggaaccggaccggccgacagcggt
ctccgggagatctccttcgatctactgcagtatttgttgtgctgccttagcgagtacgta
caaccgcaggtggaggcacagtttttggtcaagcttcgggaggagtttccgcgccaggcg
gtaccgctggttctagcgccgttcctttacggctcgacgacggcgactattgcgggagca
ggtgccagcgaaacggatgcggaggccgaagcgacgactaacagcaacagctccagtttc
gaagcagatgctttgaacgaggtgggaatcgaggatatttatgaccatttaagcgagata
atattcaccaaccagggcaaaaataatattatggacacatcttggattaatctaatcctt
gaaatcggttatgaatttacatcgagcgttgaagagtgtaagaatcatttgtgttcccgt
gagcgagaacgcgctgagcttcagtccaaagatgtcgccaagatcgtgggtcttatgtgc
cgaaggcactcgtccctgctcgattgtaatgtgaatctaccgacgccggcgaacttctgg
cctggtcagggacagggcggtggcagcaacagcagtggctcttcgcagacacaaatcact
ccgcagcaacagaccccgggcaacagtaacaacaacgatggcagcgatggcaattcgtcc
agtgataagaaggacaagaaggagacgacggaggccacgcaaacttggaagccagatgtc
tttgtgcaggcgctcaaggaggtggtgcctcagctcaactggaaggacgtgtgcatggaa
cttgatcatcccgagtttgtgctgaaggatcgcatcggtttggagctattgctcaccatc
cttcggctggccactggctctaacatatttccacatccagaatgcatttaccgtcactgg
gcaaacacggaaggtcagctgtcgcttatcgcgacaatgctgaagaacccggatctcttc
tccttcgccgactttgtatttagccagccagcgttggatgtgcttaagacggctccggat
gcggacaataaggagatctcgtcctggaagtcgcttcacctggtggaggtgctgctctcc
attgcggacaagggatactatacgcaggtccatgagctattcaagttcccagcgcagaac
tgtcccgatgtgctatttttggccttattgaacaccagtccgccgatgacgccactccgt
caggatctgtttaaccaactgataccaacgttccttggcaaccatcccaactcgaacgtg
atcttggccagcgcctggagctcgaacaacttccaacttcggtccaatatcatgaatgct
atgtccgagtggtatctccgaggcaatgagttcgatcaggtgaaactgtcgcgcatcctg
gatcttgcccaggatttaaaagcgctatcagcgctgctcaacgctcgttcatttttattc
attatcgacctggcttgccttgcctctcggcgcgagtacctgaagctggaaaagtggctt
accgataaaattcgcgaacatggggagccttttatgcaggctataatcaaggttctgcac
cgccgctgcccgcaggttatcaacgccaaagtgccagaggaccagctgcctcccaagcag
gcgcagctcttgcccgagacagttaccaccatgatcaactgtctgcaaacgtgcatcaat
aactgcatgcagccggagatggtcgaagtcatcatgcaaatgaccgcgaacgtggcgatt
atggctaacaaggcacgtgcccaacaacagcagcagccaggattggttccgccgcctcca
ccaacaattctgcgcggccatcgaggtatggatctgcctggaggcatagtccctccgcca
ccgcagcaaccgttctccggaaacctcaacgcgcagatgttcggaccaggaatggatccg
ctgacgaatatgtccaacaacttggccggcctcaacctcagcggcccgaacggagctttt
aattttggcaacatgctgacctctccatcgcgtctgatgactccgggagccaatccctat
ccgctgaacctcatgcagatgccgcaggctccgccaccacccaacgtaggaaacctaggc
cgcatgctgccagggggtccacaacagcagactccaacgccgactccaacggcccccaat
ccaaacaaccctgtgatggccgatctccagatacctgtgtcaaaggaagttgaagacgag
gtcaactcatactttcagcgcatctacaaccaccagccgaatccaacgctgtccatcgat
gaagtgctggacattttgcaacgatttaaagagtcaagtaaccggcgcgagcaggaagtc
tttttgtgcatgctgcgcaatctgttcgaggaatatcgctttttctgtcaatacccagag
aaagagctccagattactgcgcagctatttggtggcattatagatcgcaacctggtgccc
acttttgttgccctgggcctttctctgcgctgtgtcttggatgccctccgcaagcccgat
ggatctaagctttactatttcggtgtgacggcactggacagattcagaactcgattgcac
acctacaacaaatactgcgagcatatccgctccattcctcacttctctgacttcccgccg
caccttattcagtatgtggaatacggaatgcacggccaggagccgccgcctcagaagttg
attggactcagcaatactataccttcggcgatatctagcggaccaggaacggaaccaatt
tacaggaatagctccatgttaggtaatatgcccgctgccaccccgggatcgggaccgaaa
tcaagcgctgctgtgtcgcatgccacgagaatgaagtccatcgccaatgccaccaatatc
gacacacttttggtggccaaccaggaggagaaagtgactgtgccacccgagcctgtacag
gacaaaactgcctttattttcaacaacttgagccagctgaacataccacagaagtgcgat
gagataaaggagattatgaccaaggagtattggccgtggctagcacaatatctggtcctc
aaacgcgcatcaatggagttcaacttccacacactctattacaactttttggatgccctc
aaaaacggcgagatcaaccgattcgtaaccaaagagaccctacgcaacatcaaggtactc
ttgcgctccgataagggagttattaatttctccgatcgaagtctcctgaagaacctcgga
cactggttgggcatgatgaccttaggtcgcaatcgccccatcttgcagttggatctggat
cttaaatcccttttggctgaggcttaccataagggccagcaggaactgctttttgtggtt
cctttcgtagccaagatccttgagtcatccgccaagtctcgcatcttccgatcgcccaat
ccatggacaatgggtatcatgtacgtgcttggtgagcttcaccaggagccagacctcaag
ctgaacctgaagtttgaaatcgaagtactctgcaaaacacttaatctggagttggccaag
ttgcgaccagtgatctacctgaaggatcccaatcgaactcatctgattgaacagatgtcg
caaccaaaaccgaaacaacttgagccagtggcttctgcaccagctctaccgcgtgaacag
caatccccggcacaacctccgccgccaccacaacagcagcaaccaccgcagcagcaggta
cctccaccgccatcctctgcggacgtggacgcccaaaatgcggccgctatgatgatggca
gcaggcggagctaatagtactcctggatcggtatcttcgcccaatctaccgaccgattcc
aaccaggtggcactaccgccaccggagccgcgctattcatacgtggacgtaaacgtgagc
aatttccagcttattggtcagcagttggtactgccacccaatactccgttcctgcacgcc
aatcccggaatcaaacacattgtggtcaacgccgtggagcgcacgataaccgactggttg
cagcccattgtggaccgaagcatccgcattgcctgtgccactaccgagcagatcatccgc
aaggacttcgccctagatgccgacgagaaccgaatgcgcactgccgctcatcagatggta
cgaaaccttgccgccggcatggccatgattaccggtaaggatgagatagcgcgtgctatt
agccagaatctgcacaaggccttgctgtcgggtctaaatgggatgcccagcatggctgag
atccaagctgctgctatgcagttagccagcgaaaatgttgagctagtttgcgctttcatt
cagaaaacatctgctgaaaaggcagccgcagagattgataggcgtctaagcaccgatttc
gagaccagaaaaattgctcgtgaagagggcaaccgttttgtggacgcccagatcctcacc
tatcaacaggagcgtcttccagaagcagtgcgcatcaaggtgggcgcggctccagctaca
ctttatgctgtgtactcggagttcgctagaagcatacctggcttccagcagatgagcgat
cgcgatattgccctttttgtgcccaagccgacggatttgtctcagccaaatgtatttgct
aatgatgataacagcatggtatacggggaactggcaagcaaaatggagaccttcatgaac
actgcaatcggagtgccgacactccagatccaggctagcaagatgcacatgctcctcaac
gccctgattgcgacgcgtcgactgcgtgaccaagagtctgcctttaatctgctgacccgc
gcggtcgagggtttgaccgaaggattggtcaatatgcatgagaacatggagcaaatgaag
atgtaccaaaacatccatctccgtatccttggcttgctgaacaacagtttcggtgctcca
aacacagagcgagcggtaacaaagtgtttcttcgatatccgagaggaggtgcgatacaac
gtggaggcagctcgcgctttgattacgtcgcactttgtcaatctgaatcagtttgacgga
atgctacgcgactgcatggacaacggaaacaattatgtggccatatcgttcggtatcgca
ctgctggagcgcctcatcatggacgatcgagtgattaacattgtttcggacaacgaattc
atggcaactgttgagctgctaggtaggctcactcagcatcgccatcggtatccagaatgc
attgtgaatgctattgatacgctgtggagcggaaactttaacacgagcagcgactacagc
ccgttcaacggcaatgatcgttatctgtcgggagcctcccattacatccactccggcatg
catcactcatgcgatacagatgatccgccgggcttacaagagaagacggagtttctgctt
aaggattgggttgcactgtacacgcaacagaaccagcagtctacgcgcgatgcacgcaac
ttcggtgcatttgtccagaagatgaacacatatggaatcttgaaaacggacgacttgatc
acccgttttttccgccaggccacacacatttgcacggatgtggtgtacagaatgttcgcc
gagccgagtttaccaatcaaccaggccaagaacaagatattccagtggatcgatgcgttc
gtccatctgatcgcaatgctcgtgcgacactcaggcgaagcaggtaatccaaccaccaag
atcaacctgttaaacaaggtgctgggcattgtgctgggaacactgattaaggaccatgag
atgcgtggcgtgagcttccagcaggttggctatcatcgcttcttcatgatgctgttcatg
gagctgtgctcagccgatgtgattctcgagtccctgatgcacagtattgtgtcggccttc
gcctacacatatcacctcttgaatcccagcgtggctccgggcttctgctttgcttggttg
gagctcatttcgcatcgcgtcttcctgggccgcatcctggtccaaattcccgggcagaag
ggctggccgctttacgctcaactgctgcaggacctctttaaatatcttgcgcccttctta
cgcaacactgagctcggcaaaccagtccaacttttgtacaaggggacgctacgtgttcta
ctcgttctgcttcacgacttcccggagttcttgtgtgactatcattttgggttctgtgac
accatcccgcccaactgcgtccagatgcgtaacatcatcctgtcggcgtttccgcgcaac
atgcgcttgcccgatcctttcactcccaacctaaaggtggacatgctgtcggacagtagt
aatgcacctaaggtgctcagcagctacattatgaacatccagccgccgaacttcaagaag
gatttggactcgtacctcaaggcccgggcgccagttacttttctatcggagttacgtggt
cacttgcaggtgaccagcgagccaggaactcgttacaacatggcactgatgaatgctctg
gtcatgtatgtgggaactcaggcgattgctttgatcagaaacaaaaactttgtgcccaac
acctcgaacatagcacacagcgcccacatggatatcttccagaatcttgctgttgatttg
gatacggagggtcgctatctgttcttgaatgcgattgcgaaccagttgcgctatcccaac
agccacacgcactacttcagctgtgcggtgctgcatctgtttgccgaggccaactcggag
gcaattcaggagcagatcactcgcgtacttctggaacgtttgattgtgaaccgcccgcat
ccttggggactgttgatcacttttattgagctgatcaaaaatcccatctacaagttctgg
gaccatgactttgtgcactgtgcgccagagatcaccaagctctttgaatcggtggcccgt
tcctgtctggccaagtcgaacgtcacccagcagttgaacatgcctgtcgtcgatggcgag
ggccaggaggtagccaccatcaactga
DBGET
integrated database retrieval system
