Drosophila sechellia: 6608887
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Entry
6608887 CDS
T01064
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
dse
Drosophila sechellia
Pathway
dse03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6608887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dse03019
]
6608887
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
6608887
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
APOBEC3H
Motif
Other DBs
NCBI-GeneID:
6608887
NCBI-ProteinID:
XP_032570471
LinkDB
All DBs
Position
2R
Genome browser
AA seq
1869 aa
AA seq
DB search
MPAVEKSVITDWKRLWPMVSGIHYETPQDTVREELMNVASELQAGVLQFKPKNASNLELG
TLLKEKKQEKLLPFTERLQDLLDLESAQCWEILCYYLTQEYRGSASLLTQLISTETNMAK
LHEDIRHYYSLERMVVLKIVKNLIVFHRVPNHPYHKEYRAVVEKITIPRLRDSYLDQLES
LISEVPPRKLIAGECFHSAERLVAWSERNAREINEVLHILLVLAEHLPMGLEQIKRIFAA
CKQHSFGKMQSYLDDTQPYHQEISRSLSYSELMLILKCLDFEKPEKHSDLIEKLIEDLQV
DIASMYHRPEHGPLLLAWMLLRLRGTNDADDASSLLRCRQLGKRAVDLKCFVQLHLIARH
SMFADDSMLSRIVRKTIYNQVGYLCNLFDGDGSCARYEGIYELLCELVSWPHLAKDFCSR
EDDGPCSLYKTLLENFPLELTHLSKLAMSLTKAGQSNYVKSQIEALPILALRYDESQHKL
REVDTNEFELLASVQPFPRIDFTIPAGTSCTAIEHPSGCFMHFRVPVNYFDALHHEINCL
LGETGHMHGDFESSERIRNVEAGLRFLESVVKRSQSISDISAEMVHPTEMCVDLLHTFKN
VQCPPVGLLSSCLNVCTALLPLVDEEIFSRISNLHILPTVSPRSQCDFKMYANANGVGFE
SRFLGSVIDNVEKKRERYEFLLSYIGFLRAYSNLKRNRLIQMEIPGLIFLLRDVFPHVHT
WHFNSQVERNKIYFEILSFICDILDLFNTTKNPNCQQSELLVKVCVYSLLNLENGLILLR
FVGVGNSYVQYTMELETNWMQQQAHGLMMLVRLSMRILMQLLRLKEEVYGNSETLSPLEA
LIYTQPKQRDTLRIIPTVCSYMSNIFDRWLPILSCRLLKRIALQFNMSLLACLDMEADQI
RLTFMQKLPDELESDSIKIAILELVDACIAKQPGVTEAFFKVNYDLDKRSRSFFSKDCVP
NIGESIVTYMRDFLDALQVDPLTIQQALPAKIMTIFHSMWKHNLQMLVNDLVKDKQFWQK
LCSPLFSELQPNLRIYTQLLNIISIEVYTGTGTDTALLDVLNKFFEQKYFGPWLYYVFNM
PKVPAEKNSSSSDNLPDWICCLQAFKDLIVILLKKQPKFVTIPDSQFKLMAQKCLVVLVD
RSNYLEDMRPFIILAELYVFILLEFKHAYTDSLEEEQKLMDLLLQLMNRICSCYEDQHVR
AKEACLAIVTKCTHLYTDLLIRDSSIALRFLNSVVGIICSELQHMENSVSLEKSQCLNNS
DSSDSKTSTNSLILCLNLLKAVATIFHNDGPGNWDLPFVSVRLFQRLVRCVSRTLPLFSK
QVLSVQLLDVLIVFAKGHCSVEFLHCDLGEYLWLKLLPPSELLQSKHEFTKTTAADVEGW
TVEQWWPVYARGIELVTIIYEKHKKCFLQDVFQFVGIHAVFLEDALLLSKQSLEPSAMHL
IKAAVSLVASLTEHHKEWRQDNDLSLANLMRAVQSLLCHCSSLFHQQKNLKCLLAGRRSQ
LEILRSTEALIVDDELISACNDLTDIIIYCVKALLRFSPDLMELLCCSAYEPSKHSVLLD
VKFGAPKLNEENLTLTFGIVLNLVNIYVKALNMQNHGFSEVPLNSLPNVEHSGGNDDADV
CVGTQTNRTFSKSLTTASISTGSCPASELLSNMDGQLCLLALEHLLMLVASQAICIIRSP
NLETLWKQIVRRDINNELLIFNEFVRRKVILDYKENRSPWIRRKHGLCKLKCVDPVRSSS
SSSRSSEIVRRSNTNNELRVNVVRRLHLQQQQRTPAPHNFDMSSDLSPIAAIQDATMSTS
SDHRDGRKRLYPAQQAGDAFLEDELAAIELQHFPPPTEPGYCELSQVQVVEEDYLHLMSA
LFNVLPHCD
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcggtggaaaagagcgtgatcaccgactggaagcgcctgtggccgatggtctcg
ggaatccactatgagacgccacaggatactgtacgcgaggagctgatgaacgtggcttct
gaattgcaggctggagtgcttcaatttaagcccaagaatgcctcaaacctcgagctgggc
acgttgctcaaagagaaaaagcaggaaaagctgctgcccttcaccgaacgactgcaggac
ctgttggatctagaatccgcccaatgttgggaaatcctgtgctactacctcacgcaggag
taccgtggatcggcgagtctccttactcaactgatctctaccgaaacgaatatggccaaa
ctgcacgaggacatacgacattactactccctggaacgcatggttgtcctcaagattgtt
aagaatcttatcgtcttccaccgggtaccgaatcatccctatcacaaggagtatcgcgcc
gtggtcgaaaagataaccatcccccgccttagagattcatacctagaccaactggagagc
ttgattagcgaagtgccacccaggaagctaatcgcgggagaatgcttccactctgcggaa
cgcttagttgcatggtcggagcgaaacgctcgtgagatcaacgaggttctgcacatcctt
ctggtgctagcggaacacctgcccatggggttggagcagataaagagaatatttgccgcc
tgcaagcaacactccttcggaaagatgcaaagttatctggatgacacccaaccttaccat
caggagatttctcgaagcctttcatactcagagctgatgttgattctaaagtgcctcgac
tttgagaagcccgagaagcactcggatctaattgaaaaacttatagaggatctacaggtg
gacattgccagcatgtaccacagaccagagcacggacctttgctcctagcgtggatgctg
cttcgcttgcgaggcaccaacgatgccgacgatgcctccagcttgcttcgctgtcggcag
ctgggcaagcgagccgtggatcttaagtgttttgtccaactgcacctaattgccaggcat
tctatgttcgccgatgactctatgctgtcacgcattgtgcgaaaaaccatatacaaccag
gttggatatctgtgcaacctctttgacggcgatggcagctgcgctcggtatgagggcatt
tacgaattgctctgcgaacttgtctcatggccccacttagctaaagacttttgcagtcgg
gaagatgatggtccgtgttcgctatacaaaactctattagagaacttccccctagaatta
acacatctgtccaaactggcaatgtcactgacaaaagcggggcaaagcaactatgtcaag
agtcaaatagaagctttgcccatattggctcttcgttacgatgaaagtcagcacaaactc
agagaagtggacacaaatgaattcgagctcctggccagcgtgcaaccatttccgcgaatt
gattttaccatacccgcaggaactagttgcacagccatcgaacatccgtccggctgcttt
atgcactttcgtgttccggtaaactactttgacgcgctgcaccacgaaatcaactgtctg
ctaggcgagacgggtcacatgcatggtgactttgaatcgagcgagcgcatacgcaatgta
gaagctggtttaagatttctggaaagtgttgtgaagcgcagtcaatcgatatccgacatc
agcgccgaaatggtgcatcctaccgagatgtgcgttgatctgctgcacacgttcaaaaac
gttcaatgcccaccagttggacttttgtccagctgtctgaatgtttgcactgcgctgctg
ccgttggtagacgaggagatattttcacggataagcaacctacacatcttgccgacagta
agcccgcgatctcaatgcgacttcaaaatgtatgccaatgccaatggagtgggttttgag
tcgcgctttttaggctccgtcattgataatgtggagaagaaaagggagcgctacgaattc
ttgctttcttacattgggttcctgcgagcgtactccaacctgaaacggaatcgcctaatc
cagatggagattcccggccttatattcctgttaagggatgttttcccgcacgtgcacacc
tggcactttaactctcaagtggagagaaacaagatctacttcgagattcttagctttata
tgcgacatcctggacttgtttaacactactaaaaaccctaattgccaacaaagcgaactt
ttggtaaaggtgtgcgtctattcccttctaaatttggaaaatggtctgattcttttgaga
tttgtgggtgtgggcaattcttatgtccagtacaccatggaactagagacaaattggatg
cagcaacaagctcacggcttaatgatgttggtccgtctatccatgcgtatcctgatgcaa
ttactgcgccttaaggaagaggtatatggaaacagtgaaaccctttccccgctggaggcg
ttgatatacacacaacccaaacagcgtgatactctgcggatcatacctacagtatgcagt
tacatgagcaacatatttgatagatggctaccgattctgtcttgccgcctgctgaaaaga
atcgctctccagttcaatatgtctctcttggcctgtctggatatggaggctgatcaaatc
cgattgacgtttatgcagaagttgcctgatgagctagaaagtgattccataaagatagcc
atccttgagctggtggacgcatgcattgccaagcaaccgggtgttaccgaggcatttttc
aaggttaactatgaccttgataaacgttcccgttcatttttcagtaaggattgtgttccc
aatattggcgagagtattgtcacttatatgagagactttctggacgcccttcaagtggat
ccactaaccattcaacaggccttgccggctaagatcatgaccatcttccactcaatgtgg
aaacataatctgcaaatgctagtgaatgatctagtgaaggataaacagttttggcagaaa
ctctgctcgccgctcttttccgagcttcagccaaatttacgaatctacactcagcttcta
aatattatatctattgaagtctatacgggaactggaaccgataccgctttgcttgacgtc
ctgaataagttctttgaacagaaatactttggaccttggctttattacgtttttaacatg
cccaaggttccggctgaaaaaaattcgagttcttccgacaatttgccagactggatctgt
tgcctgcaggcttttaaggatctaattgtaattttgctaaagaaacagccaaagttcgta
accatacccgactcgcagttcaagctaatggcgcagaagtgtttggttgtcctggttgat
cgctcaaattatttggaggacatgcgaccgttcatcatactggctgaactgtatgtgttc
atcttactcgaatttaagcacgcgtacacagacagtttagaggaggaacagaaactaatg
gacctactgttgcaactgatgaaccgcatctgctcctgctatgaggatcagcacgtaagg
gccaaggaggcatgcctggccattgtgaccaagtgcacacatctatacacagaccttctt
atcagagactcgtctatagccttacgttttctcaactcagtcgtaggcatcatctgcagc
gaactgcagcacatggagaactcggtgagcctggaaaaatcgcaatgcctcaataattcg
gacagttcagacagcaagacatccaccaactcacttattctctgtctgaatttgctaaag
gctgtcgctaccatattccacaacgatggtcccggaaactgggatctgccatttgtgtcg
gtgcgtttgtttcaacggctcgtgcgctgcgtgtctcgaacccttccattgtttagcaaa
caagttctaagtgtgcagctgctggatgtgctcattgtatttgccaagggccactgttcc
gttgagtttctgcattgcgatttgggagaatacttgtggctgaaactgttgcctcccagt
gaacttttgcagtcaaaacatgagttcactaagacgacggctgcggatgtagaaggttgg
accgtagagcagtggtggcctgtatacgccagaggtattgagctcgttaccatcatttac
gagaagcacaagaagtgctttctacaagatgtttttcaatttgtgggcattcatgctgtt
tttctggaggatgcattgttattgagcaagcaatccttggaaccgtcagccatgcactta
attaaggctgctgttagcttagtagccagtttgacggagcaccacaaagagtggagacaa
gacaacgatctctcgcttgctaacctaatgcgtgcagttcagagtttgctgtgccactgc
tcatctttgtttcatcagcaaaaaaatttaaagtgtcttctggctggtcgacgctcccag
ctggaaatcctgcgcagcacagaggctctaatcgttgacgatgaacttatctccgcctgc
aatgacctcacggatataataatttattgcgttaaagccttgcttagattcagtccggat
ttaatggaactactgtgctgcagtgcatatgagccctccaaacactcagtcttactagac
gtcaagtttggtgcacctaagttgaacgaagagaacttgacgctcacatttggaatagtc
ctcaacttggtaaacatatacgtgaaggccttgaatatgcaaaatcatggcttcagtgag
gtgccactaaactcactgcccaacgtggagcattccgggggcaacgatgatgctgatgtt
tgtgtaggcacccaaaccaaccgcaccttctccaaatctctgaccactgcatcgatttca
accggaagctgtccagccagtgagctgctctccaacatggacggccagctttgtttgctt
gccttggagcatctgctcatgctggtcgcttcgcaagccatctgtataattcgctcaccg
aacctcgaaacgctctggaagcaaatcgtgcgtcgggacatcaacaacgagctgttaatc
ttcaacgagttcgtgcgccgcaaggtgatattagactacaaagagaaccgtagtccctgg
atacgacgaaaacacgggctctgtaaacttaagtgcgtggacccagtgaggagttcaagc
agttcttcccgcagctcagaaattgtgcgccgcagcaacacaaataacgaactgcgtgtt
aatgtcgtacgcagactgcatctgcagcaacagcagcgaactcctgcaccgcacaacttt
gacatgagcagcgatctgagtcccattgcggcaattcaagatgcaaccatgtcgacgagc
tcggatcatagagatggccgaaagcgtttgtatcccgctcaacaggcgggcgacgccttc
ttggaggacgaactggccgccatcgaactgcaacactttcccccgcccacagagcctggg
tattgtgaattgtcgcaggttcaagtggtggaggaggactacctccatttgatgtcggcc
ctctttaatgtattgccccactgcgactga
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integrated database retrieval system
