Drosophila sechellia: 6609035
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Entry
6609035 CDS
T01064
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dse
Drosophila sechellia
Pathway
dse03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6609035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dse03019
]
6609035
03041 Spliceosome [BR:
dse03041
]
6609035
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
6609035
Spliceosome [BR:
dse03041
]
Complex B
Other components
Prp19-related factors
6609035
Complex C
6609035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
Mad3_BUB1_I
TPR_15
TPR_8
TPR_12
RPN7
PPR
ARM_TT21_C
DHR-2_Lobe_A
TPR_10
Motif
Other DBs
NCBI-GeneID:
6609035
NCBI-ProteinID:
XP_002033738
UniProt:
B4HQL6
LinkDB
All DBs
Position
2R:9720745..9723645
Genome browser
AA seq
883 aa
AA seq
DB search
MVTKTIKSLSLEINFEVEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNMVYERALK
ELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEVNSAFERALVFMHKMPRIWMDYGVFMTS
QCKVTRTRHVFDRALRALPITQHGRIWPLYLKFVRRFEMPETALRVYRRYLKLFPEDTEE
YVDYLQEADRLDEAAQQLAHIVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDA
IIRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EELSLNKRMEQVAANEAATEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVTLYEDKPAEIISTYTEAVQTVQPKQAVGKLHTLWVEFAKFYEANGQVEDARVVFERG
TEVEYVKVEDLAAVWCEWAEMELRQQQFEAALKLMQRATAMPKRKIAYYDDTETVQARLH
RSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAY
EKGISLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAK
LEEEHGLARHAMSVYDRATSAVKEEEMFDMYNIFVKKAAEIYGLPRTREIYEKAIESLPE
QNMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQFLSTNNGTAADAGAGAGPDAMRLLEEKARQAAVEAKQ
KPIEKAASNIMFVRGETQGGAKGKQDTVVNPDEIDIGDSDEDDEEEDGDEENEMTNENQA
SAAATRTDGEGLVMKKLRFEQKAIPAKVFGSLKPSNQGDSDGE
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggtgacaaaaacgattaaatctctgagtttagagatcaatttcgaagtggaggatgtg
ccgtatgaggaggaaatccttcggaacgcctactccgtgaaacattggctgcgctacatt
gaccacaaagcgaaggcgccgaataatggtgttaacatggtctatgagcgtgcccttaag
gagcttcctggcagctataagatctggcacaattacctgagaacccgcaggaagcaggtg
cgcggcaagatacccacggatcccatgtacgaggaggtcaacagtgcctttgagcgcgca
ctcgtgtttatgcacaaaatgccacgtatctggatggactacggtgtctttatgacttct
caatgcaaggttacccgcacccggcacgttttcgatcgggctcttagggctctgcccatc
acgcagcacggcaggatttggccactgtatctgaagtttgtacggcgctttgaaatgccg
gaaacagcacttcgagtctaccgtcgatatttgaaactcttccccgaggacacagaggag
tatgtggactacctgcaggaagcagaccgcctagatgaagctgcccagcagctggcgcac
atcgtcgacaacgagcacttcgtttccaagcacggcaagtccaatcatcagctgtggaac
gaactgtgcgacctcatctcgaagaatccacacaaggtgcactccttgaatgtggacgcc
atcattcgcggtggactgcgtcgctacaccgatcagcttggccacctgtggaactccttg
gcggattactatgtgcgttccggcttatttgatcgagcaagggatatatacgaggaagcc
attcaaacggtgaccaccgtaagagacttcacccaagtctttgatgaatacgcacagttc
gaggaactctcgctgaacaaacgcatggagcaggtagctgccaatgaggcggccaccgag
gaggacgacattgacgtcgaactgcggctctcacgcttcgaatacctcatggagcgccgt
ttgctgctgttgaacagtgtgctcctgcgccagaatccgcacaacgtgcacgagtggcac
aagcgggtgacactgtacgaggacaagcccgccgagatcatcagtacgtacaccgaggcc
gtgcaaacagtgcagccgaagcaggcggtcggaaagctgcacaccctctgggtggaattc
gccaagttctacgaggccaacggacaggttgaggatgctcgtgtggtcttcgaacgcggc
actgaggttgagtatgtcaaagtagaggatctggcggcggtgtggtgcgaatgggcagag
atggagctacgccagcagcagttcgaggcggcactcaagctgatgcaaagagcaacggcc
atgccaaagcgaaagattgcctattatgatgatacggagacggtgcaggcgcgccttcat
cgctcgctaaaagtgtggtccatgtacgctgatttggaggagtcattcggcaccttcaag
acctgcaaagccgtctacgagcggattatcgacctgaagatctgtacgccacagatcatt
atcaattacggaatgtttctcgaggagcacaactactttgaggaagcctaccgggcctat
gagaagggcatctctctgttcaagtggcccaatgtatacgacatctggaactcttaccta
accaaatttttggagcgttatggcggcacaaaactggaacgagccagggatctcttcgag
cagtgcctggatcagtgtcctcccgagcatgccaagtacttttatttactgtatgctaag
ctggaagaggagcacggtctcgcccgtcatgccatgtcagtctatgaccgcgccacgtct
gctgtcaaggaggaggagatgttcgacatgtacaacatattcgtgaagaaggcggccgag
atctatggcctgccacgtacccgcgagatctatgagaaggccattgaatcgctgcccgag
cagaatatgcgacacatgtgcgtcaagttcgcagagttggaaacgaagttgggcgaagtg
gatcgagctagggccatctatgctcattgctcacaggtttgtgatccccgcatcactgca
gacttttggcaaacgtggaaggagttcgaagtgcgtcacggcaacgaagacacaatgcgc
gaaatgctgcgcatcaagcgctccgtgcaggccacttacaatacgcaggtgaacatgatg
gccgcccaattcctgagcacaaacaacggaacggctgcggatgccggagcaggagctgga
ccagatgccatgcggctgctggaggagaaagctcgccaggcggcagtcgaggcgaaacag
aagcccatcgagaaggcggcctcgaatattatgtttgtgcgcggtgagacgcagggtggt
gctaagggtaaacaggatacggtcgtcaatcctgatgagatcgacattggagacagcgac
gaagacgatgaggaggaggacggcgatgaggagaacgagatgacgaacgagaaccaggcc
agtgcagcggccacgagaaccgacggggaaggcctggtcatgaagaaactgcgcttcgag
caaaaggccattccagccaaggtcttcggcagcctcaagccatcaaatcaaggcgactct
gatggagagtaa
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