Drosophila sechellia: 6611391
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Entry
6611391 CDS
T01064
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dse
Drosophila sechellia
Pathway
dse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6611391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dse03019
]
6611391
03041 Spliceosome [BR:
dse03041
]
6611391
03009 Ribosome biogenesis [BR:
dse03009
]
6611391
03016 Transfer RNA biogenesis [BR:
dse03016
]
6611391
Enzymes [BR:
dse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6611391
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
6611391
Spliceosome [BR:
dse03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
6611391
Complex C
U4/U6.U5 tri-SnRNP related factors
6611391
Ribosome biogenesis [BR:
dse03009
]
Eukaryotic type
Pre-60S particles
Helicases
6611391
Transfer RNA biogenesis [BR:
dse03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
6611391
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
6611391
NCBI-ProteinID:
XP_002035935
UniProt:
B4HXS8
LinkDB
All DBs
Position
2L:15388657..15392212
Genome browser
AA seq
1051 aa
AA seq
DB search
MDIEELFDCFDEESPSVPPPALNQEEKPSGSGGSKKGNKRQATDTSTSKSSKEADGDDKG
DDTEEPTKRLKQEESTDAVGDDNPDDEPTRTLDIDDSAALEALRNRIVTHLLDAPKSCTH
EVAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQRQAILCIDNRQSVLVSAHTSAGKTVVAE
YAIAKSLAAKQRVIYTTPIKALSNQKFREFTEEFKDVGLVTGDVTINPSASCLIMTTEIL
RNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQF
AEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLAN
AGEAGKGDQKGRNGGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAK
LDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIE
ILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKNFRWISSGEYIQMAGRAGRRG
LDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERS
FYQFQNQAALPGLHDQVEQKTLELNKLTIKDEHNIASYHHIRSQLDQHGKEFRQWITKPQ
YLLPFLQPGRLVKVAAGSQEYDWGIVLNFKKQDQSRKNPLKAEPSVTIDVLLHVSEAAAK
TGDTEPCKPNERGCMEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFP
LGPPVLNPIDDMNIKDRDFRDIVNTIAQFEKRLEEHPLHKSPELERIHRRYQDKLTLQKQ
LQDLKAELKAARSLLQMEELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEM
IFNGVFNDLTAPQAVALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKVSTECKL
DLDADTYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQAS
KTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggatatagaagagctattcgactgctttgatgaagagtcgccgtcggtgccgccacca
gcacttaaccaggaggagaagccatcgggaagcggtggctccaagaaaggaaacaagcgc
caagcgactgacacctctacatcgaaatcctccaaagaagcggacggcgatgacaaagga
gacgacactgaggagcccaccaagcgtctgaagcaggaggagtcaacggatgcggtgggt
gacgacaatccagatgacgaacccactcgtaccctcgatatagacgattccgcggctctg
gaggccctgcggaacaggattgtcacgcacttgttggacgctccgaagtcatgcacccat
gaggttgccgcgcatcccgaccaggagtacatacccctaaagccgttcagcggcgtgcct
gcaaaggagtaccccttcgtgctcgatccgttccagcgccaggcgattctgtgcattgac
aatagacagagtgtcctggtttccgcccacacgtcagccggaaagaccgtggtggcggag
tatgccatagcaaaatcattggccgccaagcagcgtgttatatacaccactcccatcaag
gctctgtccaaccagaagttccgtgaattcaccgaggagtttaaggacgtgggtctggtc
accggtgatgtgaccataaatccatcggcctcctgtttgatcatgaccaccgagattctg
cggaacatgttgtaccgcggtagcgagatcatgcgcgaggtgggctgggtggtcttcgac
gagattcactacatgcgcgacaaggagcgcggcgtcgtctgggaagaaacgctcatcctt
ctgccggacaacgtgcgatatgtctttctctcggcaaccattcccaatgctcgacaattc
gccgagtgggtctgccacctgcacaagcagccatgtcacgtggtctacaccgactaccgt
cccactcctctgcagcactacatcttcccggccggaggcgatggcatccatcttatcgtc
gatgaaaaggggcagttcaaggaggacaacttcaccacagcaatggcagtgctggccaat
gcaggtgaggccggcaagggagatcagaaaggccgcaatgggggcattaagggaaccaat
gccggacaaacaaatatctttaaaatagtcaagatgataatggagcgcaattttgcaccg
gtcatcattttttcgttcagcaagaaggactgcgagatctacgccatgcagatggccaag
ctggacttcaacacccccgacgaaaagaaactagtggacgaggtgtttaacaatgccatg
gacgtgctcacggaggaggatcgtcgcctgccacaggtggaaaacgtgttgccgttgctg
cgtcgcggcattggcatccatcacggcggtctgctgcccattttaaaggagaccattgag
attctgttcggcgaaggtctgatcaaggccttgtttgccaccgaaacctttgcaatgggc
cttaacatgccggctcgaactgtgctgtttacggctccgcggaagttcgatggcaagaac
ttccgatggatcagctctggcgagtacatccagatggcgggacgtgccggccgacgagga
ttggatgacaagggcatcgtcatcctcatgatcgacgaaaaagtttcgccggctgttggt
cgggacattgttcagggcaaggcagatcccataaattcggccttccatcttacatacaat
atggtgctaaatctgcttcgcgtggaggaaatcaatccggagtacatgctggaacgcagt
ttctatcagttccaaaatcaggctgcactacctggtctgcatgaccaggtggagcagaag
acgctggagctgaataagctgactatcaaggacgagcacaacattgcctcctaccatcac
atacgctctcagctggatcagcacggcaaggagttccgtcagtggataacgaagccgcaa
taccttttgccgttcctacagcctggtaggttggtcaaggtggccgccggctcccaggag
tacgactgggggattgtgctgaacttcaagaagcaagaccaaagccgcaagaacccttta
aaggctgagcccagcgtcacgattgatgttttgctgcacgtcagtgaagcggccgccaaa
accggcgacacggagccatgcaaaccgaacgaacgtggatgcatggaggtggtgcccgtg
gcccacaccctcatcacccagatcagctcgattcgcgtgtacttccccaacgatctacgc
agtgctgacaatcggcgagccgtgctaaagactatccaggaggccaagaaacgattcccc
ctgggaccaccggtcctcaatcccatcgacgacatgaacatcaaggatagagatttccgc
gatattgtcaataccattgcccaatttgagaagcgattggaggagcatccgctgcacaag
tcaccggaactggagcgtatacaccggcggtaccaggacaagctaacgctacaaaagcag
ctgcaagacctaaaggccgagctaaaggctgcccgcagtctgctgcagatggaggaactg
aagcaccgcaagcgtgtgctccggcgcatgggctactgcaagcctggcgacgtcatcgag
ttcaagggacgtgttgcctgcgaactgagctcggcggatgaacttctcatgaccgagatg
atcttcaacggagtatttaacgacctcaccgctccgcaagccgtggctctcctctcctgc
ttcgtttgcgacgaaaagtccagcgagtcggtgaaaagcgccacggagctatcgggccca
ctgcgctcgatgcaggatctggcgcggcgcattgccaaggtatccacggaatgcaaactc
gatctggacgccgatacgtacgtggacaagtttaagcccttcctaatggacgtggtgctg
gcgtggtgcaagggctccagcttccttgcggtctgcaagatgaccgacatcttcgaaggc
tccatcatccgctgcatgaggcgactggaggagcttctgcgccagatgtgccaggcctcg
aagaccattggcaacacggacctggaaaacaagttctccgaaggaataaggctgctcaag
cgtgacattgtctttgccgcgtcgttgtatctgtaa
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integrated database retrieval system
