Drosophila sechellia: 6619875
Help
Entry
6619875 CDS
T01064
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dse
Drosophila sechellia
Pathway
dse03020
RNA polymerase
dse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
6619875
09124 Replication and repair
03420 Nucleotide excision repair
6619875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dse03021
]
6619875
03400 DNA repair and recombination proteins [BR:
dse03400
]
6619875
Enzymes [BR:
dse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
6619875
Transcription machinery [BR:
dse03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
6619875
DNA repair and recombination proteins [BR:
dse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
6619875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
6619875
NCBI-ProteinID:
XP_002044088
UniProt:
B4IK28
LinkDB
All DBs
Position
X:complement(11310806..11317846)
Genome browser
AA seq
1887 aa
AA seq
DB search
MSTPTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNP
KIKEIVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQ
PSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM
IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRF
YGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPT
PGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPT
VKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQ
IFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDR
ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENK
FQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITENGEF
KAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET
DPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTP
SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSS
PGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYAST
TPNFNPQSTGYSPSSSGYSPTSPGYSPTAQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSP
NSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQY
SPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSP
SSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMY
SPTAPSHYSPTSPAYSPSSPTFEESED
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atgagcacccccacggactcgaaggcgccgttgcgccaggtgaaacgcgtacagttcggc
attttgtcgcctgatgaaattcgtcgcatgtccgtcaccgagggtggcgtccagtttgca
gagacgatggagggcggacgaccgaagctgggcggattgatggatccgcgccagggtgtc
atagacaggacgtcgcgctgtcagacgtgcgccggcaacatgaccgagtgccccggtcac
tttggacacattgacctggccaaaccagtgttccacatcggcttcatcaccaagacaatt
aagattttgcgatgtgtgtgcttctattgctccaaaatgcttgtctcgccacacaatcca
aagatcaaggagatcgtgatgaagtccaggggacagccgcgtaagcgcctagcctacgtc
tatgatctgtgcaagggcaagacgatttgcgagggcggcgaggacatggatctcaccaag
gagaaccagcagccggatccaaacaaaaagcccggtcacggcggttgcggtcactaccag
ccgtcgatccggagaacaggactggatctcaccgccgagtggaagcatcagaacgaggat
tcgcaggagaagaagatcgtggtctcggcggagcgggtttgggaaatcctcaagcatatc
accgacgaggagtgctttattctgggcatggatcccaagtatgcgcgtcccgattggatg
atcgtgaccgtcctgcctgttccaccgttggccgtacggcccgcagtcgtgatgttcggt
gctgccaagaatcaggatgatttgacacacaagctgtccgatatcatcaaggcaaacaat
gagctgcgcaaaaacgaggccagtggagcggcagcgcatgtgatccaggagaacatcaag
atgctgcagttccacgtcgccacactggtggacaacgatatgcccggcatgcccagggct
atgcaaaagtcgggaaaaccccttaaagccatcaaggcgcgactcaagggtaaggagggt
aggattcgtggcaacttgatgggcaaacgtgtggacttctccgctcgtactgtcatcaca
cccgatccaaatctccgtatcgatcaggtcggtgtgccgcgttccattgcccagaatcta
accttccccgagctggtcactcccttcaacatcgatcgcatgcaggagctggtgcgcaga
ggcaactcgcagtatccgggtgccaagtacattgtgcgcgacaatggcgagcgtattgat
cttcgcttccatcctaaatcctctgacttacatctgcagtgcggctacaaagtagagcgc
catttgcgcgacgacgatctggtgatcttcaaccgacagcccacgctccacaagatgagt
atgatgggtcacagagtgaaagtgttgccctggtcgacgttccgcatgaacctgtcgtgt
acatcgccatataatgctgatttcgacggcgatgaaatgaatctgcacgttccgcagtcc
atggagacgcgcgccgaggtggagaacatccacatcacacccagacagatcatcacgccg
caggcgaacaaacctgtcatgggtatcgtgcaggacactctgactgcagtgcgaaagatg
accaagcgcgacgtattcattacgcgcgagcaggtgatgaatctgctcatgttcctaccc
acgtgggacgctaaaatgccgcaaccctgcatcctgaaaccgcgtcccctgtggacgggc
aaacagatcttctccctgatcatacccggcaacgtgaacatgatacgcactcattccacg
catccggacgaggaggatgaaggaccgtacaagtggatctcgcccggtgacaccaaggta
atggtggagcacggcgaacttatcatgggcattctctgcaagaagtcactgggtacatca
gccggatcattgctgcatatttgtttcctggaacttggtcacgacatcgctggtcggttc
tatggcaacattcagaccgtgatcaacaattggttgcttttcgagggccatagtatcggt
attggtgacaccattgccgatccgcagacctacaacgagatccagcaggccatcaagaaa
gccaaggacgacgtgataaacgttatccaaaaagcccacaacatggagctggagcccacg
ccgggtaacactctgcgtcagacgttcgagaacaaggtgaaccgtatcctaaacgatgct
cgtgacaagactggtggttcggccaagaaatctctcactgagtacaacaatctaaaggct
atggtggtgtctggttccaagggttccaacattaacatatcccaggttattgcttgtgtg
ggtcaacagaacgtggagggtaagcgaatcccctacggtttccgcaagcgcactcttccc
cactttattaaggacgattatggtcctgagtcgcgcggtttcgtggagaattcgtatctt
gccggcctgacaccctctgagttctatttccacgccatgggtggtcgtgagggtcttatc
gatactgctgtaaagacagctgaaaccggttacatccagcgtcgtcttataaaggctatg
gagtcggtgatggtaaactacgacggtacagtgcgtaactcggtgggccagcttattcag
ctgcgttacggcgaagacggtctttgcggcgagctggttgagttccagaacatgccaacg
gtgaaactgtcgaacaagtcgtttgaaaagcgcttcaaatttgactggagcaacgagcga
ttaatgaagaaggtatttacggatgatgtgatcaaggagatgaccgacagcagcgaagcc
atccaggaactggaggcagagtgggatcgtttggtttccgatcgcgacagtttgagacaa
atcttccccaacggcgaatccaaggtggtactgccgtgcaacctgcagcgtatgatctgg
aatgtgcagaagatctttcacatcaacaagcgcctgcccacggatctctcgcccattcgg
gtgatcaagggcgttaagacattgctcgaacggtgtgttattgtcacgggaaatgatcga
atttcaaagcaggccaacgagaacgccacgctgctattccagtgcctaatccgctcgaca
ctgtgtacgaaatacgtgtcggaggagttccgcctctccacggaggcgtttgagtggttg
gtcggagaaatagagacgcgtttccaacaggcccaggccaatcccggcgagatggtgggt
gccctggctgcccagagtttgggtgagcctgctactcagatgacactgaacaccttccat
tttgctggtgtgtcttcaaagaacgtaacactgggtgtgccgcgtctcaaggagatcatc
aacatatccaaaaaacccaaagcgccgtcgctaaccgttttccttactggcggcgctgcc
cgcgatgcggagaaggccaagaacgtactgtgccgcctggagcataccacgctgcgcaag
gttacggccaatacggctatttactacgacccggatccccagagaacggtgatatccgag
gatcaagagtttgtgaatgtctactacgaaatgcccgactttgatcccacacgcatttcg
ccctggttgctacgtattgaattggaccgcaagcggatgacggacaagaagctgacaatg
gaacagatcgccgagaagattaacgtgggcttcggggaggatcttaattgtatcttcaat
gacgacaatgccgataagctggtgctgcgcattaggatcatgaacaacgaagagaacaag
ttccaggacgaagacgaggccgtcgacaagatggaggacgacatgttcctgcgctgcatt
gaggccaacatgctgtcggacatgacactgcagggtatcgaagccatcggcaaggtgtac
atgcatctgccacagaccgacagcaagaagcgtatcgtgatcactgagaacggagagttt
aaggccatcggcgagtggctgctcgagacggacggcacatcgatgatgaaagtgctgtct
gagcgtgacgtggacccaatccgaacatcctccaacgatatctgcgagattttccaggtg
ctgggcatcgaggcggtgcgaaagtctgtcgaaaaagagatgaacgccgtgctgcagttc
tacggcctgtacgtgaactatcgtcacttggccctgttgtgcgatgtgatgacagccaag
ggccatctaatggccataacccgtcacggcattaacaggcaagacactggtgcccttatg
cgatgctccttcgaggagacagtggacgtgctgatggatgccgccgctcacgccgaaacg
gatcccatgaggggcgtgtctgagaacatcatcatgggacagctgcccaaaatgggtact
ggctgctttgaccttctgctcgatgcagagaagtgtcgtttcggcatcgagattcccaat
acgttgggcaacagtatgctaggtggcgctgctatgttcattggcggaggatccacaccg
agcatgacaccaccgatgacgccgtgggttaactgcaacacgccgcgatacttctctcca
cccggccacgtaagtgccatgactcctggcggtcccagtttctcgccttcggctgcatcg
gatgcgtccggaatgtcgcctagctggtcgccggctcatccgggctcatcgcccagttca
ccaggaccttcgatgtcgccgtacttcccagcctcgccgagtgtttctccctcttattcg
ccaacaagtccgaactacacggcatcttctcccggtggagcctcgcccaattactcgccc
tcgagtccgaactattcgccgacatcgccgctttatgcaagtccacgttacgcctcgaca
acgccaaatttcaatccccagtcgacgggttactcgccatcttcatcgggatactcgcca
acatccccggggtactcgcccacggcacagtttcagtcgagtccgtcgtttgcgggcagt
ggtagcaacatttactcgccgggcaatgcgtactcgcccagctcgtccaactactcaccc
aattcaccatcctactcgccgacatcaccatcgtactcgccgtcgagtccttcgtactcg
ccaacgtcgccttgctattcgcccacatcgccttcgtactcgccaacgagtccgaactac
acacccgttacaccctcatattcgccgacaagtccgaactactcagcgtccccgcaatat
tctccagcctcgccagcttactcgcaaacgggagtgaagtactcgcctacatcgccgacg
tactcgccgccgtcaccttcgtacgatgggtctccaggatcaccacaatatacgccagga
tctccacagtactcgccggcctcgcctaagtactcgccgacctcaccgctgtactcgccc
agttcgccacagcactcgccctcaaaccagtacagcccaacaggatcgacctattcggcg
acgagtccgcgttactcgccgaacatgtccatctattcgccgagcagcaccaagtactcg
cccacctcgccaacgtacacaccgacggcccgcaactactcgcccacgtcaccgatgtac
tcgccaacggcaccatcgcactacagtcccacgagtccggcctactcgcccagcagtccc
acgttcgaggagagcgaagactga
DBGET
integrated database retrieval system
