Drosophila sechellia: 6620294
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Entry
6620294 CDS
T01064
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dse
Drosophila sechellia
Pathway
dse03013
Nucleocytoplasmic transport
dse03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
6620294
03015 mRNA surveillance pathway
6620294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dse03019
]
6620294
Enzymes [BR:
dse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
6620294
5.6.2.5 RNA 5'-3' helicase
6620294
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
6620294
mRNA cycle factors
Common to processing body (P body) and stress granule
6620294
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
AAA_22
UvrD-helicase
NPHP3_N
ATPase
nSTAND3
nSTAND_NTPase5
SRP54
AAA_10
AAA_16
AAA_32
Motif
Other DBs
NCBI-GeneID:
6620294
NCBI-ProteinID:
XP_002044503
UniProt:
B4IL93
LinkDB
All DBs
Position
X
Genome browser
AA seq
1180 aa
AA seq
DB search
MSVDTYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSNSQSQTQNDQLEMHSRRS
AGDSHPRLASITNDLADLQFEEEDDEPGSSYVKELPPHACKYCGIHDPATVVMCNNCRKW
FCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKADS
VVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQIN
KLEELWKDNIEATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKES
ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNPWSEIGHVIKV
PDNFGDDVGLELKSSTSAPVKCTSNFTVDFIWKCTSFDRMTRALRKFAIDRNSVSNFIYS
RLLGHGRANSNDEVLFRGPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFL
ALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRSLKRASENQLLEAADVICCTCVG
AGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWP
QPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQR
AYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLN
VALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLV
NSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQMVGQAMNGAQYGGSGGSPYGNS
PLGYGAPSSNSMMGFGMGSGGNGAAGGNNNFGGAGPSWAAAQLHHDSIGYISNEHGAATL
GNMPVPVGMFMNMSNIPPRFYNQHQQAIMAVKQNRAIQQQSGNFSPGNSGIGVTGVRAGR
SASLGGNKKTHKLGKSRVMGGGTGGAPQTQGTSVSNAAPYSQQPMPLSLQMTQPSGFALS
QQPELSQDFGQISQMDGLLSQDVAFNVSGERSLNQFSQPY
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtacgcgcccagctcggcgctgtcgttcctggacatggacgacaac
gagctgcttccgggagcggatactcaacccacgcagtatgattaccgggacttcaccatg
ccctccaactcacagagccagacccagaatgatcagctcgagatgcactcacgccgctct
gccggagactcgcatccacgactggccagcatcaccaacgatctggccgatctgcagttc
gaagaggaggacgacgagcctggcagctcgtatgtgaaggagctgccgccgcatgcgtgc
aagtattgcggcatccatgatccagccacggtggtcatgtgcaacaattgccgcaaatgg
ttttgcaacggtcgtggaagcacttccggttcgcacatcatcaaccatctggtgagggcc
aagcaccgcgaggtgacgctccacggggaaggtcccctgggggagacaatcctggagtgc
tactcctgtggtgtgcgcaacgtctttgtgcttggcttcattccggccaaggccgattct
gtggtcgtgctgctctgccgccagccgtgtgccgcccagaattcgctaaaggacatgaac
tgggaccaggagcagtggaagcctctaattgcagaccgctgctttttggcctggctggta
aagcaacccagcgaacagggacagctgcgagcgcgccaaatctcagccgctcagatcaac
aagctggaggagctatggaaggataatattgaggccacgttccaagatctggagaagcca
ggcattgactcggagccagcacatgtgctactccgctacgaggatggctatcagtacgag
aagacctttgggccgcttgtccgcctcgaggccgaatacgaccaaaagctgaaagagtcg
gccacgcaggagaacatcgaggtacgttgggacgtcggcctcaacaaaaagaccattgcc
tactttacgctggcgaagaccgattcggacatgaagctcatgcatggcgacgagctgcgc
ctgcactacgtgggcgagctgtacaatccgtggagcgagatcggccacgttatcaaggtg
ccggacaatttcggcgatgacgtcggcctggagctgaaatcctcaacgagtgccccggtc
aagtgcaccagcaactttacggtggactttatttggaagtgcacgtcatttgaccgcatg
actcgtgctctgcgcaaattcgccatcgatcgcaactcggtgtcaaacttcatctactcg
cgcttgttgggccacggtcgtgcgaattccaacgacgaggtgctgttccgcggcccgcag
cccaaactctttagtgccccgcatctgcccgatttgaatcgcagccaggtgtacgccgtg
aaacacgcgcttcagcgtccgctctcgctgatccaagggccgcctggcacgggcaaaacc
gtaacttcggcgaccatcgtttaccagctggtcaagctccatggtggcacagtgctggtg
tgcgctcccagcaacacggccgtggatcagctaactgagaagatccaccgcacaaacctt
aaagtggtgcgtgtttgcgccaaaagtcgtgaggccatcgatagcccggtaagcttcctg
gcgctgcacaaccaaatccgtaacatggagaccaactcggagctaaagaagctgcagcag
ctgaaagacgagaccggtgagctgagctcagctgacgaaaagcgctaccgcagcctgaaa
cgtgcctccgagaaccaactgctggaggctgccgacgttatctgctgtacatgcgtgggc
gccggcgatggacgtctatcgcgagtcaagttcacctcgatcctgatcgatgagtctatg
cagtcgacggagccggagtgcatggtgccagtggtgctgggcgccaagcagctgatcctc
gtgggcgatcactgccagctgggacctgttgttatgtgcaagaaagcagctcgtgccggg
ctttcgcaaagtttgttcgagcgcctggtggttctgggcatccgtccgttccggctggag
gtgcaatatcgtatgcaccccgagctgtcccagttcccgtccaacttcttctacgaggga
tcgctgcagaacggcgtctgcgcggaggatcgtcgccttaagctggatttcccctggcca
cagccggagagaccgatgttcttcctggtgacgcagggacaggaggagattgccggctcc
ggcacctcgttcctcaaccgcacagaggcggccaacgtagaaaagattacgacgcgattc
cttaaggcaggcatcaagccggaacaaattggaatcatcacgccttacgaaggtcagcgc
gcgtacctggtgcagtacatgcaataccagggcagcctgcactctcgcctataccaggaa
atcgagatcgccagtgtggacgcgttccagggacgtgagaaggacatcattatcatgtct
tgcgtgcgatctaacgagcgtcaaggcatcggttttttgaacgacccacgtcgccttaac
gttgcccttacccgggccaagttcggcatcatcattgtgggcaatcccaaagtgctcgcc
aagcagcagctgtggaaccatctgctcaacttctacaaggaccgtaaggtgctcgtcgag
ggatctctgaataaccttaaggagtcgctcatccacttccaaaagcccaagaagctcgtc
aacagcatgaacattggggcacattttatgtctaccattattgccgacgctaaggaagtg
atggtaccgggctccatttacgatcgcagtggcggttacggccaaggtcgacaaatggtg
ggacaggcaatgaatggcgcccagtatggtggcagtggaggtagtccctacggaaactca
cctctcggctacggtgctcccagctccaactccatgatgggctttggcatgggcagcgga
ggcaatggcgcggccggtggcaacaacaacttcggaggggcaggacccagttgggcagct
gcccaactccaccacgactccattggctatatatccaacgagcatggagcagcaacccta
ggcaacatgccagtgccggttggcatgttcatgaacatgagcaatattccgccgcgtttc
tacaaccagcaccagcaggcgatcatggcggtcaagcagaatcgcgccattcaacagcag
tcgggtaacttctctccgggtaactcgggtattggagtcactggagtcagagccggacga
agcgcctccctaggcggcaataagaagacccacaagctgggaaaatcgcgcgtaatgggc
ggtgggactggtggagcaccgcaaacacaaggaacctcggtatccaatgctgctccatac
agtcagcagccgatgcctttgtcgctgcagatgacccagcccagcggttttgctctgtcc
cagcagccagaactttcacaggactttgggcaaatatcgcagatggacggtttgctttcc
caggatgttgcctttaacgtgtcgggcgagcggagtttgaatcagttctcacagccttat
tga
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integrated database retrieval system
