Desulfocapsa sulfexigens: UWK_00688
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Entry
UWK_00688 CDS
T02473
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
dsf
Desulfocapsa sulfexigens
Pathway
dsf02020
Two-component system
dsf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
UWK_00688
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
UWK_00688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsf03021
]
UWK_00688
Transcription machinery [BR:
dsf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UWK_00688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
MCM_C
Motif
Other DBs
NCBI-ProteinID:
AGF77268
UniProt:
M1P161
LinkDB
All DBs
Position
798207..799664
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AA seq
485 aa
AA seq
DB search
MALELRQQLKLSQKLVMTPQLRLAIKLLQMNRLELGDALQAEIEQNPGLEEDVSIQEHRE
NPQSLSTTTEQKGTEKEQDYTDQVRAEDTIPETNWEDYANTFDSNVSFSHETPAADAPSQ
FDFISEKPGLLAYLQWQLAHAELEPEEWDTALFIAGNLNRYGFLECSLEEVMEATKCDRD
SAEYILEVIQDLDPPGIAARDVSESLFLQLERMGMKDSLAAEIVKDHLNHLQTRNYKAIS
QATGRKRNEVIKAIEFITSELTPYPGLPYSTETTNYVVPDVYVRKIDGEFVIHLNEEDIP
NLKLSSQLQELLQADEGTIEKSSKAYIREKLKDAGWFIKSLHQRQRTIFKVMESILKFQR
EFFEHGATRLKPLILRDVAEDIEMHESTISRVTSNKYVHTPLGIYELKYFFSTAIPRAGE
ESLAAESIRERIRKMIQDEDPHKPLSDNSISEKLAERNIEIARRTVAKYREQLKILPVKH
RRKPK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgaactcagacaacagctcaagctatcacaaaaactggtaatgacgcctcag
ttgcgtctggccattaaactgctacagatgaaccggctggagcttggcgatgcactacag
gccgagattgagcagaatccgggcctcgaagaggatgtcagcattcaggagcatcgcgaa
aacccgcaaagcctctccacaacaaccgaacagaaaggaacggagaaggagcaggattat
accgatcaggtcagagcagaagacactatccccgagacaaattgggaagactacgccaac
acctttgacagcaatgtttccttttcccacgagacacctgcggcggatgctcccagccag
tttgatttcatctcagaaaaaccgggcctcctcgcctatctgcagtggcagctcgcccac
gccgaactcgaacctgaagaatgggatactgctctttttattgccggtaaccttaaccgt
tacggatttctcgaatgtagtcttgaagaggtcatggaagccaccaaatgtgaccgcgat
tctgcagaatatattcttgaggttattcaggatctcgatcctccaggcattgccgcccgt
gacgtctccgagtcactctttcttcagttggaacgcatgggaatgaaagactcccttgcc
gcagaaatcgttaaagatcatcttaaccatctgcagacccgcaattacaaggccatcagc
caggcaacgggccgcaaacgtaatgaagtaatcaaggctattgagttcatcacctccgag
ctcaccccgtatccgggtcttccctacagcaccgaaacaacgaactatgttgtcccggat
gtctatgttcgaaaaatcgatggcgaatttgttatccatctcaacgaagaggatattccc
aacctgaaactctcctcccaattgcaggaactgctgcaggccgatgagggcaccatcgaa
aagtcatcaaaggcctatatcagggagaagcttaaagatgccggatggttcatcaagtct
ttgcatcagcgccagcgtaccatattcaaggtaatggaaagtatcctcaaattccagcgc
gagtttttcgaacatggagcaacccgcctcaaaccactcatcctgcgtgacgttgccgaa
gatatagaaatgcacgagtccactatcagccgggtaacatcaaacaagtatgtgcacact
cctctcgggatatatgaactgaaatatttcttttccacagccattccacgagccggggag
gagtcacttgccgcagaatcaatccgggagcgtatccggaaaatgattcaggacgaagat
cctcacaaacccctcagtgataacagtatttctgaaaaacttgccgaaagaaatatcgaa
atcgcccgccgtaccgttgcaaaataccgggaacagctgaagatccttccagtaaaacat
cgtcgcaaacccaaataa
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