Desulfocapsa sulfexigens: UWK_00956
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Entry
UWK_00956 CDS
T02473
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dsf
Desulfocapsa sulfexigens
Pathway
dsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UWK_00956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsf03019
]
UWK_00956
Enzymes [BR:
dsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UWK_00956
Messenger RNA biogenesis [BR:
dsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UWK_00956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FERM_C1_MyoVII
PSV_trans_reg_dom
DEXQc_Suv3
Motif
Other DBs
NCBI-ProteinID:
AGF77530
UniProt:
M1PCR9
LinkDB
All DBs
Position
complement(1089467..1090834)
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AA seq
455 aa
AA seq
DB search
MTSVKPVSVVEKVEIPVVAKAAPAPKPQRQPAGKAAASTPLDRNQQGKRKPRKWTVSQFP
VETEEGKTRFHDFSLSPGLMHGIADLNFRYCTPIQQKSLPDVIAGKDIIGKASTGTGKSA
VFLIGIFARLLGEQQQKRRNGTPRALIIAPTRELVIQIAKDARAIAKYLPMRVAEAYGGT
DYERQQKNIRDRPVDILVATPGRLLDFSRKRVVQLDQAGIMVIDEADRMLDMGFIPDVRS
IIHKIPNKDKRQTMMFSATITEEVARLASQWCVNPISVETEADNMAVETVTQVVYTLTRD
EKYLVLYNIINSENCDRVIIFTNMKRDAKRLHDRLQRDGISCTLLTGDVPQQKRTARLES
FRNGTIKAMVATDVAGRGIHIDDISHVVNFTLPYEPEDYVHRIGRTGRAGADGISISFAD
EESSFYLMDIEEYIGESLPCITPNEALLKPIVRKK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacttctgtaaagcccgttagtgtggttgaaaaagttgaaattccggttgttgcaaag
gcagcacccgcaccgaagccgcagagacagccagcaggtaaagctgcggcctccacgcct
ctggacagaaatcagcagggaaaaagaaagccaagaaaatggactgtttcacaatttccc
gtggaaacggaagagggaaaaacccgttttcatgatttcagtctctctccagggcttatg
cacgggattgcggatttgaacttcagatactgcacccccatccagcagaaatcattgccc
gatgttattgctggaaaagatattatcggaaaggcctccaccggcaccggaaaaagtgca
gtattccttattggaattttcgctcgactcctcggggaacagcagcaaaagcgtcgtaat
ggaactcctagggcattgatcattgcaccaaccagagagctggtaatccagatcgccaag
gatgcaagagccatagccaagtatctgcccatgcgtgtggcagaggcctatggtggaacc
gattatgaacggcagcagaagaatatcagggaccgtccggtggatattctggtggccact
cccgggcgactgcttgatttctcccgtaaacgggtagtacagctggatcaggctggtatt
atggttatcgatgaggcggatcggatgcttgatatgggctttatccccgatgttcgctct
attatccataagataccaaacaaagataaacgtcagaccatgatgttttcggcaacaatt
accgaagaggttgcccgtctggcatcgcagtggtgtgtgaatcccatttcagtggaaacc
gaggcggataatatggcggtggaaactgtaacgcaggttgtttacacactcaccagagat
gaaaagtatctggtattgtataatattatcaacagtgaaaactgtgatcgggtcatcatc
tttaccaatatgaaacgggatgccaagcgactccatgatcgtcttcagcgggacggtata
agttgcaccctgcttacgggagatgttccgcaacagaagagaacagcccgtcttgagagt
ttccgaaacgggacaataaaggcaatggttgcaacggatgttgccgggcgtggtatccat
atcgatgacatcagtcatgttgtgaatttcacccttccttacgaaccagaagattatgtg
catcgtatcgggcgtaccggccgtgccggagctgatggaatttccatcagttttgcagat
gaggagagttccttttatcttatggatattgaggagtatattggagaatcgcttccctgt
attacaccgaatgaagccctgctgaaaccaattgtacgaaagaaatag
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