Desulfocapsa sulfexigens: UWK_01214
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Entry
UWK_01214 CDS
T02473
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dsf
Desulfocapsa sulfexigens
Pathway
dsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UWK_01214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsf03019
]
UWK_01214
03400 DNA repair and recombination proteins [BR:
dsf03400
]
UWK_01214
Enzymes [BR:
dsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UWK_01214
Messenger RNA biogenesis [BR:
dsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UWK_01214
DNA repair and recombination proteins [BR:
dsf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UWK_01214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
UvrD_C
AAA_19
Helicase_C
UvrD_C_2
ResIII
AAA_22
Viral_helicase1
Rhodanese
Ribonuc_red_lgC
Motif
Other DBs
NCBI-ProteinID:
AGF77782
UniProt:
M1P7W4
LinkDB
All DBs
Position
1359281..1364452
Genome browser
AA seq
1723 aa
AA seq
DB search
MPNNSQEFLARCLLFDIETNENGEIYALGASFSGKKFNTRQGQKVTLHQLAEFDDFGRNA
EFVVGHNVLAHDIPFLREQDSSLSILQKPVIDTLYLSPLAFPENPYHRLVKNYQIVRDSI
NDPAEDAVLAGRVFTEQWDAFSQRLKSGSDAPLIYRSFFQKDEKFVGTSDALGAMGVPLI
EEDELYEVFSWLVQKDVCGEALERLVDQLVDQRIEHPPLAYVTAWLTVSGSNSVLPPWVR
HHFPVVPTLIHQLREQPCKNSQCIYCSTNHNPQLFLKNYFGFEDFRSQPATEDGQSLQEA
IVTTGARNSTLFATLPTGGGKTLCYQLPALMRYRRSNALTVVISPLQALMKDQVDNFTKQ
TGSTLATAINGMLTMPERGEIMDGVRLGDVGILYVSPEQLRNKSFVQTISQREIGAWVFD
EAHCLSKWGHDFRPDYLYSIRFIREFSQQEKTKIPPVQCFTATAKKDVQSEIIDIIGREL
GLRVIQFAGGHERQNLHYEVWPVDTYEKNQTILTLLKTRYDNKGSVVIYCATRKNTENLA
EFLANAGYTVEAFHAGLEPFVKKRIQNDFIAGEIPIICATNAFGMGIDKDDVRLVIHADI
PGSLENYLQEAGRAGRDRNEAECILIFTEQDVEGQFRMSSNSRLTQREIGQILRGLRHSA
KEDGKVVLTSGEILRLGVVDIDEDEFGQDRDTRVKTAVSWLERTGFLNRDENNTRVFQGK
PLVRNIEEAREKIEELDLSSRQQKRWLAILATLMESPPSQGFSADDLACLTSFARTSDDP
ESETETQRVLRTLNDMAEQGLLSKETILSAYVRYKVKGSSEKLLKRFCQVEKDFLKILEE
ISPDVDLDKNLVIDLRQVNQRLIDLGHDYSTPSSLSLVLRGLSRDGKGLAGQRGSISIKS
RGNNLFSIMLHRDWESLKKTVAIRQQAAHVALQIIQAPLTDKISPNASLLLEFTLEAIVE
GLKRDLVLFSALKDPLAAAERALTFMHEQGVIELQQGLAVFRQAMTITINPESKGKQYTK
ANFEPLKTHYSEKNFQVHVINEYARCAINKISVAMNLVHSYFNDEKEEFVSRFFPGKEEL
LERATSEQSYQRIVEDLNNRAQEEIVSAPTDNNVLILAGPGAGKTRTVAHRVAFLLRVKR
VRPEAILVLCFNRSAAMGLRRRLRELVGKEMAWVTTLTFHGLALRLTGRSLVRQTTEVPQ
EGIDFSQVIQDAIALLKGECDVLGFVDGQPRDELMSRFSHILVDEYQDIDEEQYELVSLL
AGRTLDEKEQKLTILAVGDDDQNIYRFRGANVDFIRRFKADYKANVHYLTENYRSSVNII
AAANGLIVHNQDRMKTEHPIQINRARATLPPGGNWQLSDQVGQGKVQCLHVKNKVTQALV
LFEELQRLQSLSSDFDLNGCAILAREWQELDVIRSVFEAEGIPVSLNWGRSAFPGLARIR
ENADLLTFLHNCSLEQITAKSLLDLLPEKGLNENIWQANLRTLIGEWLDETNNTPQPIGR
VESYFYEALADQHRSRNLDNGIFLSTVHSIKGLEFDHVFVLDGSWQNKLGPEMEEERRLY
YVAMSRARETLQLFAIENSQNPHIKTLDGDFLISRRVVPSHKVPRMVPHYELLGMKDLFI
DFAGFKKENDPTCRVIKELKMGDSLTVRRGNKYLHLFNHVGIPVARLSKTAQERWQNRLN
SVSQIKVVALARRYKTDIKDQEYQKRCQSDSWEVPIVELSYFD
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaatagccaggaatttcttgcccgttgtctcttgtttgatattgaaacaaat
gagaacggtgagatatatgccttgggcgcgtcttttagtggcaaaaagtttaatacccga
caagggcagaaggtaacgctccaccaactggcagagtttgacgattttggtcgcaatgct
gagtttgttgttggccacaatgtcctggcacatgatatcccatttcttcgtgaacaagat
tcttcactgtcaatcctgcagaagccggtaattgatactctttatctttcccctttggct
tttccagaaaatccctatcatcgattagttaaaaattaccagatagtcagagacagtatc
aacgatcctgcagaagatgctgtgctggctggcagggtctttactgaacagtgggatgcc
ttttctcagcggcttaagagtggatctgatgccccgttgatttacagaagtttttttcaa
aaggacgaaaagtttgtcggcacatctgatgctcttggagcaatgggtgtgcctcttatt
gaggaagatgaactttatgaagttttttcctggttggttcagaaggatgtctgtggggaa
gctttggaaagacttgttgatcaactcgttgatcaacgaattgagcatcctccattagcc
tatgtcactgcctggttgacagtttccgggagtaattcggttcttccaccatgggtccgg
catcattttcctgtagtacccactctcatccatcagttacgagaacagccttgcaagaat
tctcaatgtatctattgcagcacaaatcataacccccagttatttctaaagaattatttc
ggttttgaagatttccggtcacaacccgcaaccgaggatggtcaaagcctgcaagaggct
attgtaacaactggtgctcgcaattctactctttttgctacgttacctacgggtggcggg
aagactctttgttatcaattgcctgcattgatgcggtatcgtcgaagcaatgcattgact
gtcgtcatctcacctttgcaggccctgatgaaagaccaggtggacaacttcacaaaacag
actggtagtacattggccacagccataaatggtatgctgaccatgcctgaaagaggcgag
attatggacggggtcagattgggtgatgtggggattctgtacgtctcgccggaacagctg
cgcaataaatcgtttgtccaaaccattagtcaacgtgagatcggtgcctgggtctttgat
gaagcgcattgtctgtccaagtggggccatgacttccgtcctgattatctctactctatt
cgttttatcagggaattttcccagcaggaaaaaacgaaaatcccacctgttcagtgtttt
actgccacagccaagaaagatgtacaatcagagattatcgatattattgggcgagaactt
ggcctgcgggtcattcaatttgctggagggcatgagcgacagaatctccactatgaagta
tggccagtagatacctatgaaaagaatcaaaccatcctgacgctactcaaaacccggtat
gataacaaaggtagtgtggtcatctactgtgctacccgtaagaacactgaaaacctggct
gagtttttggctaatgcaggctatacggtggaggcttttcatgctggccttgaacccttt
gtcaaaaaacgcatccaaaacgatttcattgctggcgaaattcccattatctgtgccact
aacgcctttggtatgggcattgacaaagatgatgtccgattggtcatccatgccgatata
ccaggctctttagagaactatcttcaggaagctgggcgtgcaggacgagaccgcaatgag
gctgagtgtatcctgattttcacagagcaggacgttgagggccagtttcgcatgagcagc
aactcgcgtttgactcaaagggagatcggtcagattttacgtggcctgcgccattctgcc
aaggaagatggaaaagtagtgttgacctccggggaaattctcaggctcggagttgtggac
atcgatgaggatgaatttggccaagatagggataccagagttaagacagcagtttcttgg
ttggagaggacaggctttctgaatcgagatgagaataacaccagggtgtttcagggaaag
cctcttgtccgcaatattgaagaagccagggagaagatagaagaacttgatctttccagc
agacaacagaaacgttggcttgctattcttgctaccctgatggaaagccctcccagtcag
gggtttagtgctgacgatctggcctgcctgacttcctttgctcgcacttccgatgatcct
gaaagcgaaaccgaaactcaacgtgtgttgcgtactctcaacgatatggcagaacagggc
ctgctctcaaaagagactatcctctcagcctatgtccgttataaggttaaagggagctct
gagaaactactcaaacgtttttgtcaggtggaaaaagattttctgaaaatactcgaggaa
atatcaccagatgtagatcttgataaaaacctggtgatagatctccggcaggtcaatcag
cgtcttatcgacttgggccatgactatagtacaccaagcagtttaagcctggtgctccga
ggtttgagccgtgacggtaagggcttggcaggtcagagggggagtatcagtattaaatcc
agagggaataatctcttttccatcatgctccaccgggattgggaatctttgaaaaagacg
gtagccatccggcagcaggcagcccatgtggctctgcagattattcaggcccctttgaca
gataagatctctcccaatgcctctcttcttttggaattcactcttgaggcaattgttgaa
ggattaaaaagagatctggtcctcttttctgcactcaaagatccgttggctgcagcggaa
cgagctttaaccttcatgcatgagcagggggtgattgaactgcaacaagggctggcggtg
ttcaggcaggctatgactatcaccatcaatccagagtccaagggtaagcaatacacaaag
gctaactttgaaccgttaaagactcactactcagaaaagaactttcaggtccacgtaata
aatgagtatgccaggtgtgccataaataagatcagcgtggctatgaacctggtgcactca
tactttaatgatgaaaaggaagaatttgtaagccgcttttttcctggtaaggaggagtta
ctggaaagagctaccagtgaacaatcgtatcagcgaattgtggaggatttaaacaaccga
gcgcaagaggaaattgtctccgcaccaactgataataacgtcttgatattggctggaccg
ggagctggtaaaaccagaacagtggcacatcgagtagcctttttgctgagagtcaaaagg
gttcgacctgaggctattctagtgctctgttttaatcggagtgcagcgatgggtctacgc
cgaagactgcgggaactggttgggaaagagatggcttgggtcacaacgctaactttccat
ggtctggccttgagactgactggtaggtctctcgtcaggcagacaaccgaggtacctcaa
gaaggaattgacttttctcaagtcatccaagatgccattgccttactcaagggagagtgc
gatgtccttggttttgtagatggtcaaccaagagatgagctgatgtccagattcagtcat
attcttgtagatgagtatcaagatattgacgaggaacagtatgagttggtttcattgttg
gcaggaaggactttagatgaaaaggaacagaaactgactatcttggcagttggggatgac
gatcaaaatatctatcgatttcggggggcaaatgttgattttattcgacgtttcaaggca
gattacaaggcgaatgtccactatttgaccgaaaactacagatcctcggtgaatatcata
gcagcagccaatggactcattgttcacaaccaagataggatgaagacagagcatcctatt
caaattaacagggcaagggctacattacctccaggtggaaactggcaactcagtgaccag
gttgggcaggggaaggttcagtgtcttcatgtcaaaaataaggtcacacaggcccttgtc
cttttcgaagagttgcagcgtttgcaaagcctcagtagtgattttgatttgaatggatgt
gcaatattggccagggaatggcaggagttggatgtcatccgctcggtctttgaggcagag
ggaattcctgtaagtcttaattggggcaggagtgccttcccaggtttggcacgtattaga
gaaaatgctgacttattaacctttcttcacaattgcagcttagaacagattacggcaaaa
tcacttttggatcttctgcccgagaaaggattaaacgaaaatatttggcaggcgaacttg
aggaccttgattggtgagtggctggatgaaacaaacaatactccgcaaccgattggacga
gtagagagctacttttatgaggctttggcggatcagcatcgctcaagaaatctggataat
ggtatctttctttccacggttcactcaataaagggattggagtttgaccatgtctttgtt
ctggatggcagttggcagaataaacttggtccagagatggaagaagagcgcaggctttat
tatgtggccatgtccagagcccgagagaccttgcaactttttgcaattgagaattcgcag
aatccacatatcaaaactctggatggtgattttctgatttccagaagggtcgttccttct
cacaaggttccgcgaatggttccgcattatgaattactgggtatgaaagatctttttatt
gattttgcggggtttaaaaaagaaaatgaccctacctgcagggtcattaaggaacttaag
atgggagacagtctgacagtaaggaggggaaacaagtatctgcacctttttaatcatgta
ggaatcccggtggcccgtctttcgaaaacggcccaggaaagatggcaaaatcgtttgaat
agtgtcagccaaataaaggttgttgctttggccagacggtacaagacggacatcaaggat
caggaatatcaaaaaagatgtcaaagtgacagttgggaagtacctattgttgagctcagt
tattttgattaa
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