Desulfocapsa sulfexigens: UWK_01604
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Entry
UWK_01604 CDS
T02473
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsf
Desulfocapsa sulfexigens
Pathway
dsf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UWK_01604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsf03400
]
UWK_01604
Enzymes [BR:
dsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UWK_01604
DNA repair and recombination proteins [BR:
dsf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UWK_01604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
MFD_D3
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AGF78162
UniProt:
M1P920
LinkDB
All DBs
Position
complement(1790888..1794439)
Genome browser
AA seq
1183 aa
AA seq
DB search
MHTPFSTGPIPCSTALTCSSLRGNSKILLAALQAEMQTCCCIVPDEEMVVQVEEDLKLFT
NRSVLTYPGYEIPAYTPLSPDPLTTAARLSTLYRLHETVAKNHSILVVSAEALMRRTMPA
KFLFAHAELLLSGEECDRDDLFRKLNNLGYEQVNLVQSVGDYSIRGGIIDIFPPSFQAGQ
EIHTSPIRLDFFGDTIESLRGFNPISQRSICEIDEAIILPASDISYPSPSSTRMKQILNT
FDKESSRLAWGSDESLKIRDRIASAMRFPGMEFFLPVFYPDTESVSSLFDFLPKDTCLIH
FSPEMEEQARAVVQERINNNYEEAKSLHTPALDPNQIFLPPEETREKMASFANLHCSTTT
DINNFHTLTATNHQILKQDISLQRKERGLVPPLSDQIHSWQNQGDTVVLCCRSLRQTKTL
AELLERHQHTIELLESPIDLKTISRTAGCDILYLCDQPLSEGFSLTTPPIHFLSESELFG
EMRIGNKKKTKEKLGESIRFTELHDGDVVVHRDHGLGLYLGMATLTMQGVVNDYMCIEYR
DGDKLYLPVDRLNLISRYEGLSDKSPRIDKLGTASWRAAKAKVKEEVWKVAEELLEIYAR
RELREGRRFSPPGELYHELEESFPFDETVGQDKAITDVISDLTSDQPMDRLVCGDVGYGK
TEVAVRAAFKVVEDGAQVAILVPTTVLAEQHAKTFRERMQGFPVTVECINRFRTAAQQKR
IIKELATGEIDIIIGTHRLLSKDVSYRELGLLIIDEEHRFGVSHKEKIKRIKSEVDILTL
TATPIPRTLQMSLLSIRDLSVISSPPEHRRPVKTFVARYDDLVIKEAVLKELRRGGQVFF
VHNRVKSIYRMASKVQELVPEARIAVAHGQMNGKELEEIMVRFVNREIDVLVATTIIESG
LDIPSANTMIINRADTLGLAEIYQLRGRVGRSSSQAFAYLLVPSLDNLSKDSKDRLRALM
ESNELGGGFKLAMSDLQIRGGGNLLGVSQSGHITAIGYDLYLDLLQKTVADMKARAAAGG
DTAISDDTVEAEINLQISAYIPETYIPDISQRYVAYRRISALSMAETCMYEDLLEELDDR
YGPVPEETHNLFKIVALKKELALLGVSKLEKGKDTFVFSFTENTPLDPRNLLAYLQNGSK
KRKAPPRRLTPDGRLIIPASIDSSERLFTVLRHILTELNGLTQ
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgcatactccattttcaacaggcccgatcccctgtagcactgccctcacatgttcatca
ctgcgtggcaactccaaaattcttctggcagcactgcaagctgaaatgcaaacatgctgc
tgtatcgtccccgacgaggagatggttgtccaggttgaagaggatctgaaactcttcaca
aaccgttctgtcctcacctatcccggctacgaaatccccgcctacacaccactctcacct
gatccgcttaccaccgcagccagattatcaaccctgtaccgtcttcatgagaccgttgca
aaaaaccactccattcttgtggtttcagcagaagccttgatgcggcgtacaatgcccgca
aaatttctgttcgctcatgccgaactccttctctctggtgaagaatgtgaccgggatgat
ctttttcgaaaactgaataatctcggatacgaacaggttaatctcgttcaaagcgtcgga
gactattccatccgtggaggaataattgatattttcccgccttcatttcaggcaggccag
gaaattcacacgtccccaatacgccttgacttctttggtgacaccattgaatcactccgt
ggtttcaatccaatcagtcaacgctccatctgtgaaatagatgaggccattatccttccg
gccagtgatatcagttatccatccccctcttctaccaggatgaagcagattctgaatact
ttcgataaagaaagtagcagacttgcctggggaagcgacgaaagtctgaagatccgagat
cggatcgcttctgctatgcgctttccaggtatggaattttttctgcctgttttctatccc
gacactgagtctgtcagcagcctctttgactttcttcccaaggacacatgcttaattcat
ttttcccctgaaatggaggagcaggcccgtgccgtggttcaggaacggatcaacaacaat
tatgaagaggcaaaatccttacatacccctgcgcttgatccaaaccagatttttcttcct
cctgaagaaaccagggaaaagatggcctcttttgcaaatcttcactgttctaccaccacg
gacatcaacaattttcacactctaactgccacaaatcaccagattctgaaacaggatatc
agcctgcaacgcaaggaacgtggactggtaccgccactttccgaccagattcattcctgg
caaaatcagggtgacacggttgttctctgctgccgatccctgcgtcaaactaaaacgctt
gcggagctgcttgaaagacatcaacacactatcgaacttcttgaaagtcccatagacctg
aagacaatctcaaggaccgcgggttgtgacatcctctacctctgtgatcagcctctaagt
gaaggcttttcccttaccactcccccgatacacttcctctccgaaagtgaactcttcggg
gaaatgcgcattggcaacaaaaagaagacaaaggaaaaacttggcgagtccatccgtttt
accgaactccacgacggtgatgtggttgtccatcgtgaccatggcctcggcctctatctt
ggtatggcaacgcttaccatgcagggagtggtcaatgattacatgtgcattgaatatcgg
gatggtgacaaactctatcttcccgttgaccgccttaatctcatcagtcgctacgaaggg
ctttcagacaaatcaccgcgtattgacaagcttggtaccgcatcatggcgcgctgccaaa
gctaaggtgaaggaagaagtatggaaagttgctgaggaactccttgaaatctatgccagg
cgtgaactccgtgaagggagacggttctctcctccaggagaactctaccacgaactggaa
gaatccttcccctttgatgaaaccgttggccaggacaaagccattaccgatgtcataagt
gacctcaccagcgatcaacccatggaccgccttgtatgtggcgacgttggttatggcaag
acagaggttgcagtacgggctgccttcaaggttgttgaagacggggcacaggtcgccatt
cttgtccccactacggtgcttgccgaacagcacgccaaaaccttcagggaaagaatgcag
gggtttccggttacagtggaatgtattaaccgctttcgtactgcggctcaacagaaacgg
atcattaaggaacttgcaaccggtgagattgatattatcataggaacccatcggctcctc
tccaaggatgtcagctatcgggaacttggtctccttatcattgatgaagaacaccgcttt
ggtgttagccataaggagaagatcaagcgaataaaatccgaggtggatatcctcaccctc
acagccacacctattccaagaacgttgcagatgtcactcctctccatccgtgatctctct
gtcatttcaagtccgccagaacatagaaggcccgtaaaaacctttgtcgcacgctatgac
gacctggttatcaaagaggctgtcttgaaagagctacgccgtggaggccaggtctttttt
gttcacaaccgggtgaaatccatttacaggatggcaagcaaggtgcaggaacttgtcccc
gaggcccgtattgctgtggcacatggccagatgaacggcaaagaacttgaagaaattatg
gtaagatttgtaaaccgcgagatcgatgttctggtggcgacaacaattatcgaatcaggc
ctggatataccatctgcaaacaccatgattatcaaccgtgcagacacccttggccttgcc
gaaatttaccagttacgcggccgggttggcaggtcatcttcccaggcttttgcctattta
ctcgttccatcactggataatttgagcaaagactcgaaagacagactacgggccctgatg
gaatctaatgagcttggtggcgggtttaaacttgccatgagtgacctgcagatccgtgga
ggcggcaatctgctcggggtgtcccaatccgggcacataacggccataggctatgatctc
tatcttgaccttctgcagaaaaccgtcgctgacatgaaggctcgagcagcagctggcggc
gataccgctatttcagatgacacggtagaggcagaaatcaaccttcagatatccgcctat
atacccgagacctacatcccggacatcagccagcgctacgtcgcctatcgccgtatttct
gcactctcgatggccgaaacctgcatgtatgaggatctgcttgaggaacttgacgaccgt
tatgggccggttcccgaagaaacacataatctttttaagattgtcgcactcaaaaaagaa
ctggcactgctaggggtcagtaaactcgagaaggggaaggatacctttgtgttctcattc
acagaaaacacccctctcgatcccagaaatcttcttgcctacctccaaaatggcagtaaa
aagagaaaggcccctccacgaagactcactcccgatggaaggttaattatcccggccagc
attgactcatcggaacgactgtttactgtgttacgacatatattaacggaactgaatgga
ctgacacaataa
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