KEGG   Desulfocapsa sulfexigens: UWK_02117
Entry
UWK_02117         CDS       T02473                                 
Name
(GenBank) hypothetical protein YmdA/YtgF
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
dsf  Desulfocapsa sulfexigens
Pathway
dsf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dsf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UWK_02117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dsf03019]
    UWK_02117
Messenger RNA biogenesis [BR:dsf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     UWK_02117
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD KH_PNO1_2nd KH_NusA_2nd KH_2 KH_KhpA-B KH-I_KHDC4-BBP
Other DBs
NCBI-ProteinID: AGF78660
UniProt: M1PG69
LinkDB
Position
2374205..2375764
AA seq 519 aa
MDFQLIIYLGGGLVAGIAVGILLRKRLVEGHEANINAQGKLIIETAISQAEQIKKESLLK
AKEAAYKQKQNAEEEIRKEKLELKEELQRLGQKKEQLKQEWTTLDTRRSDQEKHSEYLKT
QEKELLEKNKEAELLIGKQRFELEKLSGLSQDEAKKMLMESLESEARMDAAKRLARIENE
MKMEADRKGKNILALAISRYAGDYVADKTVSMVPLPNDEMKGRIIGREGRNIRAIEAATG
IDIIIDDTPEAVILSGFNPVRREVARLALLQLITDGRIHPARIEEVVEKVTKELEVVMRE
AGEQATFDVGCHGVHVELINLLGRLKYRTSYGQNVLQHSLEVAFLCGIMAAELGIDVKMA
KRAGLLHDIGKAVDHEVEGSHAVIGRDLAKKYGEPEAVVYAIGAHHEDQPPQSVLDILVQ
SADALSGARPGARKEMLQSYVKRLEDLEAIADAFEGVDKSYAIQAGRDLRIIVDSQKVKD
GEATLLSQDIAKAIEEKLTYPGQIRVTVIRETRAVQYAR
NT seq 1560 nt   +upstreamnt  +downstreamnt
gtggattttcaattaattatatatcttggtgggggacttgtcgctggtattgcagtgggg
attttactgcgaaagcggcttgttgagggccatgaggccaatattaatgctcaagggaag
ctgatcattgaaacagctatttctcaggctgagcaaataaaaaaggaatcgctgctaaag
gcgaaggaagctgcctacaaacagaagcagaatgccgaggaagagatacgaaaagaaaaa
ctggaactcaaagaagagctgcaacggcttgggcaaaagaaggaacagttaaaacaggag
tggacaactctggatacgcggcggagtgatcaggagaaacattccgaatatctgaaaact
caggaaaaagaactgctggaaaagaataaagaagccgagcttcttatcggtaagcagcgg
tttgaactggaaaagctttcaggacttagtcaggatgaagccaagaaaatgctcatggag
tctcttgagagtgaagctcgtatggatgcagcaaaacgattggcccggatcgaaaatgag
atgaaaatggaggccgaccgtaaggggaagaacatcctggcgcttgccatttcccgctat
gccggcgactacgttgctgataaaacggtgtccatggttcccctgccaaacgatgagatg
aagggacggatcatcggtcgtgaaggacgcaatatcagagccatagaagctgcaacgggt
attgatatcattattgatgataccccggaagccgttattttgtcaggatttaatccagtg
cgtcgtgaggtcgcccgactggccttactgcaacttattaccgatggtcgaattcacccg
gcacgaatagaggaagttgttgaaaaggtaaccaaggagcttgaagttgtaatgagggag
gctggtgaacaggcaacttttgatgttggttgtcatggagttcacgtggaattgattaat
cttcttggacggttgaagtacagaacgagttatggccagaatgtgttgcagcattccctc
gaagtggccttcctttgcggaattatggctgccgagcttggtattgacgtgaaaatggct
aagagagccggattacttcacgatattggcaaggcagtagatcatgaggttgaagggtct
catgccgtaatagggcgtgatcttgccaagaaatatggtgaacctgaagcagttgtctat
gcaatcggtgctcatcatgaggatcagccaccacagtctgtgcttgatattctggtgcag
tctgccgatgcactttcaggtgcacgacccggggcacgaaaggagatgctccagtcctac
gtgaaacgacttgaggatcttgaagccattgcagatgcttttgaaggtgtggataaatcc
tatgctattcaggctggtcgtgatttacggattatagtcgactctcagaaggtgaaggat
ggtgaggcgactcttctcagtcaggatattgcaaaggccattgaagagaaactgacctat
cccggccagatacgggtgacggtgattcgagaaacacgtgcagtacagtatgcaaggtaa

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