Desulfocapsa sulfexigens: UWK_02117
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Entry
UWK_02117 CDS
T02473
Name
(GenBank) hypothetical protein YmdA/YtgF
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dsf
Desulfocapsa sulfexigens
Pathway
dsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UWK_02117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsf03019
]
UWK_02117
Messenger RNA biogenesis [BR:
dsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UWK_02117
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_NusA_2nd
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AGF78660
UniProt:
M1PG69
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All DBs
Position
2374205..2375764
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AA seq
519 aa
AA seq
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MDFQLIIYLGGGLVAGIAVGILLRKRLVEGHEANINAQGKLIIETAISQAEQIKKESLLK
AKEAAYKQKQNAEEEIRKEKLELKEELQRLGQKKEQLKQEWTTLDTRRSDQEKHSEYLKT
QEKELLEKNKEAELLIGKQRFELEKLSGLSQDEAKKMLMESLESEARMDAAKRLARIENE
MKMEADRKGKNILALAISRYAGDYVADKTVSMVPLPNDEMKGRIIGREGRNIRAIEAATG
IDIIIDDTPEAVILSGFNPVRREVARLALLQLITDGRIHPARIEEVVEKVTKELEVVMRE
AGEQATFDVGCHGVHVELINLLGRLKYRTSYGQNVLQHSLEVAFLCGIMAAELGIDVKMA
KRAGLLHDIGKAVDHEVEGSHAVIGRDLAKKYGEPEAVVYAIGAHHEDQPPQSVLDILVQ
SADALSGARPGARKEMLQSYVKRLEDLEAIADAFEGVDKSYAIQAGRDLRIIVDSQKVKD
GEATLLSQDIAKAIEEKLTYPGQIRVTVIRETRAVQYAR
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
gtggattttcaattaattatatatcttggtgggggacttgtcgctggtattgcagtgggg
attttactgcgaaagcggcttgttgagggccatgaggccaatattaatgctcaagggaag
ctgatcattgaaacagctatttctcaggctgagcaaataaaaaaggaatcgctgctaaag
gcgaaggaagctgcctacaaacagaagcagaatgccgaggaagagatacgaaaagaaaaa
ctggaactcaaagaagagctgcaacggcttgggcaaaagaaggaacagttaaaacaggag
tggacaactctggatacgcggcggagtgatcaggagaaacattccgaatatctgaaaact
caggaaaaagaactgctggaaaagaataaagaagccgagcttcttatcggtaagcagcgg
tttgaactggaaaagctttcaggacttagtcaggatgaagccaagaaaatgctcatggag
tctcttgagagtgaagctcgtatggatgcagcaaaacgattggcccggatcgaaaatgag
atgaaaatggaggccgaccgtaaggggaagaacatcctggcgcttgccatttcccgctat
gccggcgactacgttgctgataaaacggtgtccatggttcccctgccaaacgatgagatg
aagggacggatcatcggtcgtgaaggacgcaatatcagagccatagaagctgcaacgggt
attgatatcattattgatgataccccggaagccgttattttgtcaggatttaatccagtg
cgtcgtgaggtcgcccgactggccttactgcaacttattaccgatggtcgaattcacccg
gcacgaatagaggaagttgttgaaaaggtaaccaaggagcttgaagttgtaatgagggag
gctggtgaacaggcaacttttgatgttggttgtcatggagttcacgtggaattgattaat
cttcttggacggttgaagtacagaacgagttatggccagaatgtgttgcagcattccctc
gaagtggccttcctttgcggaattatggctgccgagcttggtattgacgtgaaaatggct
aagagagccggattacttcacgatattggcaaggcagtagatcatgaggttgaagggtct
catgccgtaatagggcgtgatcttgccaagaaatatggtgaacctgaagcagttgtctat
gcaatcggtgctcatcatgaggatcagccaccacagtctgtgcttgatattctggtgcag
tctgccgatgcactttcaggtgcacgacccggggcacgaaaggagatgctccagtcctac
gtgaaacgacttgaggatcttgaagccattgcagatgcttttgaaggtgtggataaatcc
tatgctattcaggctggtcgtgatttacggattatagtcgactctcagaaggtgaaggat
ggtgaggcgactcttctcagtcaggatattgcaaaggccattgaagagaaactgacctat
cccggccagatacgggtgacggtgattcgagaaacacgtgcagtacagtatgcaaggtaa
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