Desulfocapsa sulfexigens: UWK_02929
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Entry
UWK_02929 CDS
T02473
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V), alpha subunit/helicase superfamily I member
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dsf
Desulfocapsa sulfexigens
Pathway
dsf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
UWK_02929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsf03400
]
UWK_02929
Enzymes [BR:
dsf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
UWK_02929
DNA repair and recombination proteins [BR:
dsf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
UWK_02929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
HHH_5
AAA_11
HHH
AAA_22
Helicase_RecD
nSTAND3
AAA_28
UvrD_C
HHH_3
HHH_2
AAA_18
AAA_24
PIF1
AAA_5
RecR_HhH
NPHP3_N
AAA
SRP54
AAA_17
CbiA
Motif
Other DBs
NCBI-ProteinID:
AGF79459
UniProt:
M1NIS7
LinkDB
All DBs
Position
complement(3257186..3259666)
Genome browser
AA seq
826 aa
AA seq
DB search
MGDSLNTEEIQGIVERITFHNESNGWSVLRVKCYNDFDISTVIVHQMKVFAGATMKFTGY
WSNHPKFGRQFTATSAEERKPASAAALEKYLGSGLIKGVGPKTAKRIVSHFGTSTLEVFE
ESIEDLLLVPGIAKKKLQGISNAWNEHRAIRDVMLFLQGHGISTLFAVRIFKKYGQKAIE
RVTANPYQLANDFYGIGFFSADKVAFSLGIEQNAPVRIIAAIRHILSASREQGHCYLHVG
QIQESISTLLDLDLSDQMEHYLRSMENSDLLRKRQLPLSDGSLVACYYSKTLYFDEQSCA
EDVAALCRPLNVDCGHVEKWLFEYYKKQDFSLSEEQAKAVRGIVTYGCSILTGGPGCGKT
TTTQTLVRLFLAMGKVVLLAAPTGRAAQRMEEVVGVEARTIHRLLEYQNGSFKKCRENPL
SCDVLVVDECSMLDISLCAALFAALPKDGQLVLVGDADQLPSVGPGNVLGDLLSSEIVPV
FQLKAVFRQARNSKIISFAHDINSGKIPHIQSPFKKPTLWQEKCDCLFIDSNEATQKQLS
SIRMAKKQLRFNLREVEYGEENLYCHTHPEKDQEGKREWEQKKNSHFEHIDFGLLQTAEN
NADELRAVLKKVHPWSSLYYGLTAGQVLLRLYSEWIPKYFGSDTEIQVLSPMTRGSLGTM
KINETIQQAMNPENTKKKGQIILGQRVFRTGDRVIHRKNNYDLGVFNGDIGQITHINSID
MTCLVKFFSDERTVEYQKDQLSELELAYAITIHKSQGSEFDCVIIPLVSQHFNMLFRNLI
YTGLTRAKKLAVFIGTRQALAMAINNIDTVKRQTALSLLLRQQTGD
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgggtgactcattaaatactgaggagattcaggggatagtcgagcggattacttttcat
aatgaaagcaacggttggagtgttctcagggtcaaatgttataatgattttgacatttcc
acggtaatagttcatcagatgaaagtttttgccggtgctaccatgaaatttactgggtac
tggtcaaaccatcccaaatttgggcgtcagtttactgcaaccagtgcagaagaacgtaaa
cctgcatctgctgcagctcttgaaaaataccttggttccggacttattaaaggagtagga
cccaaaactgctaaacgaatcgtttcccattttgggacaagcactctagaagttttcgaa
gaatccatagaagatcttctgctggttccaggtatagcaaagaaaaaactacagggaatc
agcaatgcctggaacgaacacagggccattcgtgatgttatgctttttctgcagggacac
ggtatttccactctctttgcggtgcggatctttaaaaaatatgggcagaaggccatagaa
agagtaaccgccaatccctaccagcttgcaaatgatttctatggcataggctttttttcg
gcggataaggtagcattctctttgggaattgaacagaacgctcctgttcgtatcattgcc
gctatcagacacattctttcggcatccagggaacagggacattgttatctgcatgttggt
caaatacaggagagtatctcaacactccttgaccttgatcttagtgaccagatggagcac
taccttcggtcgatggagaattccgacctgttgagaaaaagacaactgccgctatcagac
ggctcattagttgcctgttattactcaaaaacgctctattttgatgaacaaagctgtgct
gaagatgtagctgccctctgcagacccctgaacgtcgattgtggtcatgtggaaaaatgg
ctttttgagtattataaaaaacaggatttctccttaagtgaggagcaggcaaaagctgta
agaggtattgtcacctatggctgttccattcttaccggcgggcctggctgtggaaaaacc
actaccacccagacacttgtcagactgtttcttgccatggggaaggtggttcttcttgcc
gcacctaccggaagagctgcgcaacgtatggaagaagttgtcggggttgaggccagaacc
atacacaggctacttgaatatcagaacggatcatttaaaaaatgtcgtgaaaaccctctt
agttgtgatgttcttgtggtggacgaatgctccatgcttgatatcagtctgtgtgctgct
ctttttgccgccctgcccaaagacggacagcttgttcttgttggtgatgccgaccagtta
ccttctgttgggcctggcaatgtccttggtgatttgttaagctctgaaattgtccctgtt
tttcagttgaaagccgtcttccgccaggctcgcaattcaaaaattatttcctttgcccat
gatataaatagtggaaaaattccacacatacagtctccatttaaaaaaccaacattatgg
caggaaaagtgcgactgcctttttattgattctaacgaagccactcagaaacagctgagt
agcatacggatggcaaaaaaacagcttcgcttcaacttgcgtgaagtagagtatggtgaa
gaaaatctttattgccatacgcatcctgaaaaagatcaggaaggaaaacgtgagtgggaa
caaaagaaaaactctcactttgaacatatcgatttcggactgctgcagactgccgaaaat
aatgctgacgagttacgggcagttctgaaaaaagtgcatccctggtcctcgctctactat
ggtttaacggcagggcaggtgttgcttcgcctctatagtgaatggatacccaaatacttt
ggatcagacaccgaaattcaggtcctttctccaatgactcgcggcagtcttggtaccatg
aagataaatgagaccatacagcaggctatgaatcctgaaaacaccaaaaaaaaaggacag
attattctcggccagagagtttttcgtactggagatagagtgatacatcgtaaaaacaat
tatgatcttggggttttcaacggggatataggtcaaataactcacataaactcaatagat
atgacatgccttgtgaaatttttttcggacgagcgcacagtggaatatcaaaaggatcag
ttgagtgaacttgagttggcctatgctattaccatacataaatcacaggggagtgaattt
gattgtgtgatcattccacttgtttcccagcacttcaacatgctttttcgtaacctcatt
tacactgggcttacacgtgcaaaaaaactcgcggtgtttatcgggacgcgtcaggctttg
gctatggctataaataatatagatacggtaaagcgccagacggctctttcgcttttactc
cgacagcaaacaggggattga
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