Desulfocapsa sulfexigens: UWK_03137
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Entry
UWK_03137 CDS
T02473
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dsf
Desulfocapsa sulfexigens
Pathway
dsf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UWK_03137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsf03019
]
UWK_03137
03009 Ribosome biogenesis [BR:
dsf03009
]
UWK_03137
Enzymes [BR:
dsf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UWK_03137
Messenger RNA biogenesis [BR:
dsf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UWK_03137
Ribosome biogenesis [BR:
dsf03009
]
Prokaryotic type
rRNA helicases
UWK_03137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
TY-Chap1
DUF4795
Motif
Other DBs
NCBI-ProteinID:
AGF79666
UniProt:
M1PTJ3
LinkDB
All DBs
Position
3479034..3480749
Genome browser
AA seq
571 aa
AA seq
DB search
MKTFKELGIDENILKGLEALGFETPTAVQEQVIPLMIEKQVDLVSLAQTGTGKTAAFGIP
LIQWTNPSKRHTQSLVLCPTRELCIQVAKDLESFSKFVPKINILAVYGGARIDQQINSLQ
KGVQIIIATPGRLKDLLNRKAVNLSKINYVVFDEADEMLQMGFQDELTAILAHTPKEKNT
LLFSATMPQEVARISQKYMSNPIELTIGTKNAGAENVRHEFYLVHPKNRYLALKRIVDNS
PDIYSIVFCRTRKETNDIAHKLIQDGYNADALHGDLSQAQRDQVMGRFRCRNIQILVATD
VAARGLDVNDLTHVVNYNLPDETSGYTHRSGRTGRAGRKGISIAIIASNEQYRLRLIENK
IQKKFIQCRIPTGEEICRKQLINQIDTVMDVKVNHDQIAPLYEEIAEKLAHLDREALIKQ
FVSLEFNRFLEYYKNATDLNISSTQKDGRGRTERAPGELQKDLLHPKNKFTTFSINVGRR
QGIMPQGVIGKINAIQDVGRIKIGKIEILRNSATIEADSRYTAQILAAFQRSEINGKTIS
IEITKSKGPSKAYAGKRKGNFHRRERKPQAA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacttttaaagaattaggcattgatgaaaacatcctgaagggtcttgaagctcta
ggatttgaaactcccacagctgtccaggaacaggtaatcccactgatgattgaaaaacag
gtcgatcttgtcagcctggctcagactggaacaggaaagacagcagcttttggaattccc
ctgatccagtggaccaatccttcaaaacggcacactcagagtcttgtcctgtgtcccacc
cgggaactctgcattcaagtcgccaaagaccttgaatcattctcaaaattcgtacccaaa
ataaacattcttgccgtctatggcggtgcccgtattgaccagcagataaacagccttcaa
aagggtgttcaaattattatcgcaacaccgggccgccttaaggatctccttaaccgcaag
gccgttaatctttctaagattaattatgtggtttttgatgaagctgatgaaatgctgcag
atggggttccaggatgagcttacagctatcctcgctcacactccgaaggaaaaaaacacc
cttcttttctctgcaaccatgccacaagaagtcgccaggatttcacagaaatatatgtca
aatcccattgaactcacgattggtaccaagaatgccggtgctgaaaatgttcgtcacgaa
ttttatctggttcaccccaaaaatcgctacctggctttaaaacggattgtcgataattca
cccgacatttattctattgttttctgtagaacccgtaaagaaaccaatgatattgctcat
aaattaatccaggatggttacaatgcggatgcgttacatggggatctctctcaggcccag
cgtgatcaggtcatgggtagatttcgctgtagaaacattcagatccttgtagcaacggat
gttgcggcaaggggtcttgatgtgaacgacctcacccatgtggtcaactataacctgccc
gatgaaacatcgggatacacccatcgcagtggccgaacaggaagagccgggcgcaaaggg
atatccatcgccatcatcgcttcaaatgaacagtaccgccttcgattgatcgaaaataaa
atacagaaaaaatttattcagtgcagaatcccgactggagaggaaatctgcagaaaacaa
ttaatcaaccagatcgataccgtcatggatgtaaaggtaaaccatgaccagattgcgcct
ttgtatgaagaaattgctgagaaactagcccacctcgatcgtgaagccctgattaaacaa
tttgtttcactcgaattcaaccgctttctcgaatactacaaaaatgcaaccgatttgaat
attagttcaacccaaaaagacggtcgaggcagaacggaaagagctcctggagaattacag
aaggacctactgcaccccaaaaacaaattcaccactttcagtataaatgttgggaggcgc
cagggtataatgccacagggggtgattgggaaaataaatgcaattcaggatgttggtagg
ataaagattggaaagatagaaatattgagaaactcagcgaccattgaagcggacagtcgt
tacaccgctcagatactcgcagcctttcagcgttctgaaataaacggaaagacgatctct
atagaaatcacaaaatccaaaggtccttcaaaagcctatgcaggaaaacgtaagggcaat
tttcaccgtagagagcgaaagccacaagccgcctaa
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