Desulfocapsa sulfexigens: UWK_03418
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Entry
UWK_03418 CDS
T02473
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dsf
Desulfocapsa sulfexigens
Brite
KEGG Orthology (KO) [BR:
dsf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsf03016
]
UWK_03418
Enzymes [BR:
dsf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
UWK_03418
Transfer RNA biogenesis [BR:
dsf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
UWK_03418
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AGF79935
UniProt:
M1PK78
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All DBs
Position
3799492..3801498
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AA seq
668 aa
AA seq
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MATTGKLIEYLDGGKFFCAYVIDAQAKRLRLINQNGREMNLPASRIVHCSKKNHTIELPR
EELTRQLQETATLRTQLMEKINLEEIWELISEEPSDTFSPDFLAELSFGQDADDDIVSAF
LRTIFIDRLYFKYKEGKVVAHSPEQTEQLLRQRDKEEKLQTLISMGADFLQQVHNSSRKN
LVIDENGKECFAIIRDFYLSGAESKHADIARKILKAAGFNRPHDPFHLLVKAGIWDANEN
IPLLRNDLPVVFPLLGIQQAEMLLQQGVDKLFQDPARKDFTDLKPITIDGSTTLDFDDAL
TVEAQDNGNVLVGVHISDVAHYVRPEDPLFLEAMQRGTSIYFPEGQIPMLPRHLSQGICS
LIQGEFRAAMSFMILLSDEAEVLRIRIYPSIIKVARRLTYDEADTMIKTDPELAILNDLR
IKLRNRRLDAGALLLPFPDVNIHVHDGSKVQVSLADTDTPSRTLVSEMMILANTQAARYV
ADRMAPGLFRAQKPPRRRVVSGLDNDLFLNSMQRKMLSRGELLINAQPHSGLGVTQYTTI
TSPIRRLLDLVMQHQLHSLIRRQDIRFTEEMCKDFTSVIGRTLARANSVRQQRHRYWLLK
YLETKREHPLTALTLESGPKRTSLLLTDILLNFDMPTPAINRPEPGQRVQVKVLRVDALD
NTLNFEWC
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacaacaggaaaactcatagaatatctagatggaggtaagtttttctgtgcctat
gtcattgatgctcaagctaaacgcctaagactcataaaccagaatggcagagaaatgaac
ctacctgcctcccgtatagttcactgttcaaagaaaaatcacacaattgaacttccccga
gaagaattaaccagacagctccaggaaacagccacgctccggacacaactcatggagaag
atcaatcttgaggaaatatgggaacttatttctgaagagccctcggatacattttcgccg
gattttcttgctgaactgagttttggtcaggacgctgatgacgatattgtttctgccttt
ctacgcacaatatttattgacaggttatattttaaatataaagaaggcaaggtcgttgcc
catagtccagagcaaacagagcaactgctaaggcagcgtgacaaagaggaaaaacttcaa
actcttatcagcatgggtgcagattttctccaacaggttcataacagttcccggaaaaat
ctcgttatcgatgaaaatggcaaagaatgttttgcaatcatccgtgatttctatctttcg
ggcgctgaatccaaacatgccgatattgccaggaaaatcctcaaagctgccggtttcaac
agaccacacgacccctttcatcttctggtgaaagccggaatctgggacgccaacgaaaac
atccctctgcttcgcaatgatctaccggtggtatttccattgcttggtatccagcaggct
gaaatgctgctccagcagggagtcgacaaacttttccaggatccggcacgaaaggatttc
accgacctgaaacccatcaccatagatggttccaccacactggattttgacgatgccctc
actgttgaggcacaggataatggcaacgtcctggttggggtgcacatctcggatgttgcc
cattatgtacgccccgaagatcctctcttcctggaagcaatgcagcgcggaacatccatt
tatttcccggagggtcagattcccatgcttccccgccatctttcccagggaatttgtagt
ttgattcaaggagagtttcgggcagcaatgagttttatgatccttctctccgatgaagct
gaagtcctcaggattcggatctacccatctattataaaagtggcaaggcgccttacctac
gacgaagctgacaccatgatcaaaaccgatcctgagcttgccatactcaacgaccttcgc
attaagttgcgaaacaggcgcctcgatgcaggggccctgcttctcccctttcccgatgtg
aatattcatgtccatgatggctcaaaagttcaggtcagccttgccgacactgacactcca
tcacgaacactggtatctgagatgatgattcttgccaacacccaggcggccagatatgtc
gccgacaggatggcgcccggattattcagagctcagaaaccaccacgaagacgggttgtt
tcaggattggacaacgacctttttctcaattcaatgcaacgaaagatgttgtcacgtggc
gaactgctgatcaatgctcagccccatagcggcctgggagtcactcagtacacgacgatc
acctccccgatacgcagacttcttgatctggtaatgcagcaccagctccactctttgata
cgacgtcaagacatccgctttaccgaggaaatgtgcaaggacttcacctcagtcattggc
cgaacgctcgcccgtgccaatagtgtacggcaacaacgtcaccgctactggttactgaaa
taccttgagacaaaaagagagcatccccttacagccctgacccttgaatccgggcccaaa
cgaacatcccttctactcacggatattcttctgaactttgacatgccaactcctgccatc
aatcggcccgagcctggtcaacgggtgcaggtgaaagtgcttcgggttgacgcactggac
aataccctcaactttgaatggtgttag
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