Dyella stictolepturae: ACQZ29_20170
Help
Entry
ACQZ29_20170 CDS
T11880
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dsg Dyella stictolepturae
Pathway
dsg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACQZ29_20170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsg03021
]
ACQZ29_20170 (rpoC)
03400 DNA repair and recombination proteins [BR:
dsg03400
]
ACQZ29_20170 (rpoC)
Enzymes [BR:
dsg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACQZ29_20170 (rpoC)
Transcription machinery [BR:
dsg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACQZ29_20170 (rpoC)
DNA repair and recombination proteins [BR:
dsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACQZ29_20170 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BSH_YknX
RnfC_N
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
XTY95658
LinkDB
All DBs
Position
unnamed2:complement(3372..7586)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRTAPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVIDPGLTALERGQLLSEDQYLEAVEEHGDEFDARM
GAEAVYELLKSLDLPGEVIRLKEEIGSTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMATNNILSPANGEPIIVPTQDVVLGLYYMTRELVNVKGSGMVFSGIGEVRRAYDNR
AVQLHAKIKVRIKQVHVDEEGGRTSETLIVDTTVGRALLLEIMPEGLPFALANTELTKKN
ISRLINACYRRLGLKDTVVFADHLMYTGFRFATRAGISIGIDDMIIPAEKKPILEEAEKE
VVEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVTDAEGKTVNQKSMN
SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITSHDCGTEDGVIMQPIVEGGDVVEPLRERVL
GRVAVEDVYAPGDDMEPIVTRDTLLDEALVEKLDKAGVQSIKVRSPITCSANHGVCALCY
GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGTLK
FNNLKTVHHNQGHLVAVSRSGEVSVIDVNGRERERYKVPYGATIAIKDGDPVKAGQTVAN
WDPHTHPIVSEVAGTVRFIDFIDGITVQSQTDELTGLESAVVTDPKRRGTAAKDLRPIVR
LEDAKGRELKLPGTDVPAQYMLPAGAIVSIQNGVQVGVGDVVARIPQETSKTRDITGGLP
RVADLFEARKPKEPAILAERSGVISFGKDTKGKQRLIIKDVDGNEHEELIPKWRQVIVFE
GEHVEKGETIVDGEPSPHDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEAIIRQM
LRKVEISDPGESHYLRGEQVERVRINGENDRAISRGERPAEYQSVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHAQRHRQGGLTASEL
ETLSGSASSASFAEATTGSDIGVE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttgctcaatctgttcaatcagcagcgcaccgcgcctgactttgacgcgatc
aagatcgccctggcttcgccggagctgatccgctcgtggtcgtacggcgaagtgaagaag
ccggaaacgatcaactaccgtaccttcaagcctgagcgtgacggcctgttctgcgccgcc
atcttcggtccggtgaaggactacgagtgcttgtgcggtaagtacaagcgcatgaagcat
cgtggtgtggtctgcgaaaagtgcggcacggaagtgacgctggccaaggtgcgccgtgag
cgcatgggccacatcgaactggcttcgccgaccgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcttgatgctggatatgacgctgcgtgacatcgagcgcatcctgtac
ttcgaagccttcgtggtgatcgatccaggtttgactgcgctcgagcgcggtcagctgctc
agcgaagaccagtacctcgaagcggtcgaagagcacggtgacgagttcgacgcccgcatg
ggtgccgaggccgtctatgagctgctcaagtcgctcgacctgccgggcgaagtgattcgc
ctcaaggaagagattggctcgaccaattccgagaccaagctcaagcgcctcaccaagcgc
gtcaagctgatcgaagccttcctcgaatctggcaacaagccggagtggatggtgctgacc
gtgctgccagtgctgccgccggacctgcgtccgctggttccgctggatggtggtcgtttc
gctacgtccgacctcaacgatctgtaccgtcgcgtcatcaaccgtaacaaccgtctgcgt
cgcctgctcgaactcaatgcgcccgatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgacgcgttgctcgacaacggccgtcgcggtcgtgccatcaccggcacgaac
aagcgcgcgctgaagtcgctcgccgacatgatcaagggtaagcagggtcgcttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtgatcgtggtcggtccgacc
ttgcgtctgcaccagtgcggtctgcccaagaagatggcgcttgagctgttcaagcccttc
atcttcgccaagctgcaggctcgtggtgaagccaccacgatcaaggctgccaagaagctg
gtcgagcgcgaagaaggccaggtgtgggacatcctcgaagaggtgatccgcgagcatccc
gtcatgctcaaccgcgcgccgacgctgcatcgtctgggcatccaggcgtttgagcccaag
ctgatcgaaggtaaggccatccagctgcatccgctcgtctgtacggcgttcaacgccgac
ttcgacggtgaccagatggctgtgcacgtgccgctgtcgatcgaggcgcagctcgaagct
cgcgccctgatgatggcgaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgacccaggacgtggtgttgggtctgtactacatgacccgcgagctggtgaacgtg
aagggttcgggcatggtgttctcgggtatcggcgaagtgcgccgcgcctacgacaaccgt
gctgtccagctgcacgccaagatcaaggtgcgcatcaagcaggtgcacgttgacgaggag
ggcggtcgcacgtccgagacgctcatcgtcgatacgacggtgggtcgcgcgttgctgctc
gaaatcatgccggaaggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atctcgcgcctgatcaacgcctgctaccgccgtctgggtctgaaggacacggtcgtgttc
gcggatcacctgatgtacaccggcttccgcttcgctacccgcgcaggcatctccatcggc
atcgatgacatgatcatccctgccgagaagaagccgattctggaagaagccgagaaggaa
gtggtcgagatccaggagcagtaccagtcgggtctcgtgaccgccggcgagcgttacaac
aaggtcgtcgacatctggtcgcgcaccaacgagcttgtcgccaaggcgatgatcgacggt
atcggtaccgagaaggtcaccgatgccgaaggcaagacggtcaaccagaagtcgatgaac
tcgctgtacatcatggctgactccggcgcccgtggttcggtcgctcagattcgtcagctg
gcgggtatgcgcggcctgatggctcgcccggacggctcgatcatcgagacgcccattaag
gcgaacttccgcgaaggcctgaacgttctgcagtacttcaactccacccacggtgctcgt
aagggtctggcggatacggcgttgaagaccgctaactccggttacctcacccgtcgtctc
gtcgacgtggctcaggacgtggtcatcacctcgcatgattgcggtaccgaagacggcgtg
atcatgcagccgatcgttgaaggcggcgacgtggtcgagccgttgcgcgagcgcgtgctt
ggtcgcgtagcggtcgaagacgtctacgcccctggcgacgacatggagccgatcgttacc
cgcgatacgttgctggacgaagccctggtcgaaaagctcgacaaggccggcgtgcagtcg
atcaaggtgcgttcgccgattacctgctccgccaatcacggtgtttgcgcactgtgctac
ggccgcgatctggcccgtggccatctggtcaacatgggcgaggccgtgggtgtggtcgcc
gcgcagtcgatcggtgagccgggtacccagctcaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcagcggcagtggacaacgtgacggtgaagaccaccggtacgctgaag
ttcaacaacctcaagaccgtgcatcacaaccagggtcacctggtggcggtctcgcgctcg
ggcgaagtcagcgtcatcgacgtcaacggccgtgagcgtgagcgctacaaggtgccttac
ggcgccaccatcgccatcaaggatggcgacccggtgaaggctggccagaccgtggccaac
tgggatccgcatacccatccgatcgtgtcggaagtggccggtaccgtgcgcttcatcgac
ttcatcgatggcatcacggtgcagagccagaccgacgaactgaccggcctggagtcggcg
gtggtgaccgatccgaagcgccgtggtacggccgccaaggacctgcgcccgatcgtgcgt
ctggaagatgccaagggtcgcgagctgaagctgccgggtaccgacgtaccggcgcagtac
atgcttccagccggtgccatcgtgtcgattcagaacggtgtgcaggtgggcgtgggtgac
gtggttgcccgtatcccgcaagaaacgtccaagacccgcgatatcacgggtggtctgccg
cgcgtggccgacttgttcgaagctcgcaagcccaaggagccggcaattctcgccgagcgc
tcgggtgtcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
gtggacggcaacgagcacgaagagctgattcccaagtggcgtcaggtcatcgtgttcgaa
ggcgagcacgtggagaagggcgaaaccatcgtcgacggcgagccgagcccgcacgacatc
ctgcgcttgctgggtgttgagccgctggctgcgtacctggtcaaggaaatccaggacgtc
taccgtctgcagggcgtgaagatcaacgacaagcacatcgaagcgatcattcgccagatg
ctgcgcaaggttgagatttccgacccgggtgagagccactacctgcgtggtgagcaggtc
gagcgcgtccgtatcaacggcgagaacgatcgtgccatcagccgtggtgagcgtccggcg
gagtaccagtcggtgctgctgggtatcaccaaggcctcgctggctacggaatctttcatc
tcggcggcttccttccaggaaaccacccgagtgctgacggaagccgcagtccgcggaacg
cgcgacaccttgcgtggcctgaaggaaaatgttattgtcggccgtctcattccggcaggt
acgggtctggcgtatcacgcacagcgtcatcgccagggcggtctgaccgcttcggagctc
gaaacactctccggctccgcttcttcggcctccttcgcggaagccaccaccggtagcgac
attggtgtggagtaa
DBGET
integrated database retrieval system
