Dyella stictolepturae: ACQZ29_20175
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Entry
ACQZ29_20175 CDS
T11880
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dsg Dyella stictolepturae
Pathway
dsg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACQZ29_20175 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsg03021
]
ACQZ29_20175 (rpoB)
03400 DNA repair and recombination proteins [BR:
dsg03400
]
ACQZ29_20175 (rpoB)
Enzymes [BR:
dsg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACQZ29_20175 (rpoB)
Transcription machinery [BR:
dsg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACQZ29_20175 (rpoB)
DNA repair and recombination proteins [BR:
dsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACQZ29_20175 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Thioredoxin_4
Motif
Other DBs
NCBI-ProteinID:
XTY95659
LinkDB
All DBs
Position
unnamed2:complement(7676..11833)
Genome browser
AA seq
1385 aa
AA seq
DB search
MTYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYREFLQEHVAPKQRDEKGLHAALKSV
FPIVSYSGNAALEYVDYRLGEPAFDERECRNRGMTFGAPLRVTVRLVIYDKDSPASKKAV
KYVKEQEVYMGEIPLMTDTGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNVEMLETFFEHNVFHLGK
KGGTTLELVAERLRGETLTFDLTIGDKVLVEAGKRITARHVRQLAAENITALEVPDDYPV
GRILAIDVVDSKTGELLAQANDEITAEQLENFRKAGIEVVPTLYVNDLDRGAYISHTLRI
DNTKTQLEALVEIYRMMRPGEPPTKDAAQNLFYNLFFTFDRYDLSAVGRMKFNRRVGRQE
IVGPGVLYDHKYFAERKEEEAQSLVKSQGATSDILEVLKVLIDIKNGHGTVDDIDHLGNR
RVRSVGEMAENTFRIGLVRVERAVRERLSLAESEGLTPQELINAKPVAAAVKEFFGSSQL
SQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGL
INSLAVYARTNTYGFLETPYRKVVGGKVTNTVDYLSAIEEGDHVIAQANSPLKDGAFVED
FVSCRFRGESELRPAAEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQTPLVGTGIERAVARDSGVITTAKRGGVIDQVDAARIVVRVNEEEVGDNDAGVDIYT
LTKYTRSNQNTNLNQRPLVNVGDIVAKGDTLADGSSTDLGELALGQNMLIAFMPWNGYNF
EDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPNVGEQALARLDESGIVY
IGAEVKAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQ
VFTRDGIEKDKRAKQIEEMEIKRIRKDLDDQFRILEGAIYNRMRTQLVGKTAMSGPGGLK
RGVEISDAYLDGLKKDDWFKINVKEEDVTEFLERAADQIKRHKEEFDKRFKEKQGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPFSADGLPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMLEAQAKITQIREFLDQIYNHHVAGAVQH
VDLKSLTDQEILTLANNLQEGVPMATPVFDGAEETEIKAMLRLADLPESGQTMLFDGRTG
EAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMAAGMPESFNVLVKEIRSLGIDID
LEEVK
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgacctactcgtttaccgagaagaagcgcatccgcaaggatttcggcaagcgtccccct
gttttgggcgtgccgaacttgctgaccatccagaccgattcctatcgcgaatttctgcag
gagcatgtcgctcccaagcagcgcgatgagaagggtctccacgccgccctgaaatcggta
ttcccgattgttagttattcgggcaatgccgcgcttgagtatgtcgactatcgcctgggc
gagcccgcctttgacgagcgcgaatgccgcaaccgtggcatgacgttcggcgcgccgctg
cgcgtgaccgtgcgtctggtcatctatgacaaggacagcccggcctccaagaaggccgtg
aagtacgtgaaggaacaggaagtctacatgggcgaaattccgctcatgaccgacaccggc
accttcatcatcaacggcaccgagcgcgttatcgtctcgcagctgcatcgttcgccgggc
gtgttcttcgatcacgaccgcggcaagacgcatagctcgggcaagttgttgttctcggct
cgcgtgattccttaccgcggttcgtggctcgacttcgagttcgatccgaaggatgcgctg
ttcacccgtatcgaccgtcgccgcaagttgccggtgaccgtattgctgcgcgcgctcggc
tacaacaacgtcgagatgctggagaccttcttcgagcacaacgtgttccacctgggcaag
aagggtggcacgacgctggagctggtcgccgaacgtctgcgtggtgaaacgctgaccttt
gacctcaccattggtgacaaggtgctggtggaagccggcaagcgcatcaccgcgcgtcac
gtgcgtcagctggccgccgagaacatcacggcgctggaagtgccggacgactatccggtc
ggccgcatccttgccatcgacgtcgtcgacagcaagaccggcgagttgctggctcaggcc
aacgacgagatcactgccgagcagctggagaacttccgcaaggctggcatcgaagtggtg
ccgaccctgtacgtgaacgatctggatcgcggtgcgtacatctcgcacacgctgcgcatc
gacaacaccaagacgcagctcgaagcgttggtggaaatctatcgcatgatgcgtccgggc
gagccgccgaccaaggacgccgcgcagaacctgttctacaacctgttcttcaccttcgac
cgttacgacctgtcggccgtgggtcgcatgaagttcaaccgtcgcgttggccgtcaagag
atcgtcggtccgggcgtgctgtacgaccacaagtactttgccgagcgcaaggaagaagaa
gcgcagtcgttggtgaagtcgcagggcgccacctctgacattctcgaagtgctcaaggtg
ctgatcgacatcaagaacggtcatggcaccgtcgatgacatcgatcacctgggtaaccgt
cgtgtgcgttcggtcggcgaaatggccgagaacaccttccgcatcggtctggtgcgcgtt
gagcgcgcggtgcgtgaacgcctgagcctggcagagtccgagggtctgaccccgcaggag
ctgatcaacgctaagccggtggcagccgcagtgaaggagttctttggctcctcgcagctc
agccagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgccgcgtttcg
gctctgggaccgggcggcctgacccgtgagcgcgcaggcttcgaagtgcgcgacgtgcat
ccgacccattacggccgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctg
atcaactcgctggccgtttacgcccgcaccaacacgtatggcttcctcgagacgccgtac
cgtaaggtcgtgggtggcaaggtcaccaacacggtggattacctgtcggcgatcgaagaa
ggcgatcacgttattgcgcaggcgaactcgccgctcaaggacggtgccttcgtcgaagac
ttcgtgtcttgccgtttccgcggcgaatccgagctgcgcccagctgccgaagtcgactac
atggacgtttcgcccatgcagacggtgtcggttgcagccgcactggtgccgttcctggag
cacgatgacgccaaccgcgcactgatgggcgcgaacatgcagcgtcaggccgtgccgacg
ctgcgttcgcagacgccgctggtgggtacgggtatcgagcgcgccgtggcgcgtgactcg
ggcgttatcaccaccgccaagcgcggcggtgtgatcgaccaggtcgatgcagcacgtatc
gtggttcgcgtgaacgaagaagaggtcggcgacaacgatgccggcgtcgatatctacacg
ctcaccaagtacacccgttccaaccagaacaccaacctcaaccagcgcccgctggtgaac
gtgggtgacatcgtggcgaagggcgacacgctggccgacggttcgtcgaccgatctgggt
gagctcgcgctcggccagaacatgctgatcgccttcatgccgtggaacggctacaacttc
gaagactcgatcctgctctctgagcgcgtcgtgcaggaagaccgctacacctcgatccac
atcgaggagctgtcctgcatcgcgcgcgacacgaagctgggcgccgaagaaatcaccgcc
gacatcccgaacgtgggtgagcaggcgttggcgcgtctggacgagtccggcattgtgtac
atcggcgctgaagtgaaggccggtgacatcatggtcggcaaggtcacgcccaagggcgag
agccagctgacgccggaagagaagctgctgcgtgcgatcttcggtgagaaagcgtccgac
gttaaggacagctcgctgcgcgtgccgcctggtatggatggcaccgtcatcgacgtgcag
gtctttactcgcgacggtatcgagaaggacaagcgcgccaagcagatcgaggaaatggaa
atcaagcgtatccgcaaggatcttgatgaccagttccgcatcctggaaggcgcgatctac
aaccgtatgcgcacccagctcgtcggcaagactgcgatgagcggcccgggtggtctcaag
cgcggtgtcgaaatctctgacgcttacctggacggcctgaagaaggacgactggttcaag
atcaacgtcaaggaagaggacgtcaccgagttccttgagcgcgcggctgaccagatcaag
cgccacaaggaagagttcgacaagcgcttcaaggaaaagcaaggcaagatcacccagggc
gacgacctcgcgccgggcgtgctcaagatggtcaaggtgttcctggccgttaagcgccgc
atccagccgggcgacaagatggctggtcgtcacggtaacaagggcgtggtctccaacgtg
gtgccggtggaagacatgccgttctccgccgacggtctgccggtggatatcgtgctcaat
ccgctgggcgtgccttcgcgtatgaacatcggccagattctggaagtgcatctgggctgg
gccgccaagggcctgggcaagaagatccagaagatgctcgaggcgcaggccaagatcacg
cagattcgcgagttcctggaccagatctacaaccaccacgtggcgggtgctgtgcagcac
gtcgacctgaagtcgctcaccgatcaggaaatcctgaccctggcgaacaaccttcaggaa
ggtgtgccgatggcaacgccggtgttcgacggtgccgaagaaaccgaaatcaaggcgatg
ctgcggcttgcggatctgccggagtcgggtcagaccatgttgttcgatggtcgcaccggc
gaggcgttcgatcgcccggtcacggttggctacatgcactacctgaagctgaaccacttg
gttgacgacaagatgcatgcgcgttcgaccggtccgtactcgctcgtcacgcagcagccg
ctgggtggtaaggcgcagttcggtggtcagcgcttcggcgaaatggaagtctgggcgctg
gaagcctacggcgcggcttacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgtaaccagatgtacaagaacattgtcgacggcaaccacgagatggcggcgggc
atgccggaatccttcaacgtgttggtgaaggaaatccgctcgctcggtatcgatattgat
ctggaagaagtgaagtga
DBGET
integrated database retrieval system
