Drosophila simulans: Dsimw501_GD18353
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Entry
Dsimw501_GD18353 CDS
T01065
Symbol
Dsim_GD18353
Name
(GenBank) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dsi
Drosophila simulans
Pathway
dsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dsimw501_GD18353 (Dsim_GD18353)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsi03019
]
Dsimw501_GD18353 (Dsim_GD18353)
Enzymes [BR:
dsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dsimw501_GD18353 (Dsim_GD18353)
Messenger RNA biogenesis [BR:
dsi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Dsimw501_GD18353 (Dsim_GD18353)
mRNA degradation factors
3'-5' decay
Ski complex
Dsimw501_GD18353 (Dsim_GD18353)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
Motif
Other DBs
NCBI-ProteinID:
KMZ05384
UniProt:
B4R250
LinkDB
All DBs
Position
3R
Genome browser
AA seq
1197 aa
AA seq
DB search
MSEIRGEDNLERLRNYILRPELSLHNPLPDVLPRKFDPMRLLHAPRCPGSTTLAPRRDQS
GQILEFVELDVEVVGANANNSMSMQREPGLLEDATRGSHSNFPFWPGGFDEQRQQIAALD
VSNIQFGDKLLTVPPGFSSGYDFSQSQSVTLPPVVTDPSNVDLLENLEQDLDVQEWMKLT
RSEGTSSTETPQSPKQSNVQSPSEEFKDVDDHIMKADLKPVLNISTTTKNFKSDWAEMVD
ISHPINNFKEQIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIAL
SKRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLY
CGSDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVG
STKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGKYLQSNYEKAVERKKEM
QGKAKGGGGGPRNHLNAKQEQNTWIGLIDFLRRGNMMPVVAFTLSRNRCDSNLAALQSVD
LNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLILKDALERGIGVHHSGILPILKEIVEML
FQNGLVKLLFATETFAMGVNMPARTVVFDSCKKYDGLEMRNLKPGEYIQMAGRAGRRGHD
ETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAVILTCLRIESIKVEDIMKFSF
KEFNLKLQLPTQQKQLRLAEDKFAMLPTLGEHLQPLINFYDKAVEYWKEKHRIMKFVVTQ
PKIQKELKAGRVIVITHGKHYNKLAILLNTKSVPGKDTIYKVLVLDHQFKAKDSDSLQQG
ELYHKILSLTPRNMTFQPEGIGGHTVLDIKAIDIISITKSTLKVDADAIIRNWEQRQLER
FKDSPPSGSVIKAVTELNQLNESYIDNPDNIKHVNLSKEIIVNADSEVAMLNYVDHLLRQ
VGTFLPHTNIAGFEQEFEKVYERRMLEIHIEELRFINSARNLTLYPDYCNKLQVLRALKY
IDDLDEVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKLHDKPVI
PEALKECVAAFEQINDTILAEEQRFQATISTDNRLNFGLLEVVYEWARNKPFAEIMKLTT
VQEGIIVRCIQQLNETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagattaggggcgaggataacctcgaacggcttcgaaactatatcctgcgaccg
gagctgtccctccacaatccgctgccggatgttttgccccgcaaattcgatccgatgcgc
ctgttgcatgcgccccgttgcccgggaagcaccacgctggctcctcgccgggaccagagt
ggtcagatactggagttcgtggaattggacgtggaggttgtgggcgccaatgccaacaac
tcgatgtccatgcagcgggagccgggcttgctggaagatgcgacgcgtggctcccactcc
aattttcccttttggccgggcggattcgatgagcagcgccagcagatcgcagctctggat
gtcagcaacattcagttcggggacaagctgctaacggtgccaccgggcttcagctctggc
tacgacttctcccaatcgcaatctgttacactgccgcccgtggtcaccgatcccagtaac
gtcgatctattggaaaacctagagcaggatctggacgtccaggagtggatgaagcttacg
cgcagtgagggaacaagctccactgaaacgcctcaaagtcccaaacagtcgaacgtgcaa
tctccttcagaggagttcaaagacgtggacgatcacattatgaaggctgacctgaagcca
gtgctaaacatttccaccacaacaaagaacttcaagagcgactgggccgaaatggtggac
ataagccatcccatcaataacttcaaagagcagataccttgccccgccatggatttcccc
ttcgaactggatgtctttcaaaagcaggccattctcaagctggaacaacgccagtacgtt
ttcgttgcagcccacacctctgctggcaagacggttgtagctgaatatgccatcgctctg
tccaagcgagatctcacccgcaccatctacacatcgccgatcaaggcgttgtccaatcag
aagtaccgcgacttccgaaagaccttcaaggatgtgggccttattacaggggacctgcag
atagagcccaccgcctcctgtctgatcatgaccaccgagattctccgctcaatgctgtat
tgcggcagcgatgttacgcgggatctggagtgggtgatcttcgacgaggtgcactacatt
aataacccagaaagaggacatgtctgggaggaggtcattatactcctgcccgagcatgtt
aacattataatgctcagtgccaccgtgcccaataccttggaattggctgactgggttggg
agcaccaagaagcgaaaggtctatgtgatcagcacattaaaaagaccagtgcctctgacg
catttcctctatactggtgctggaggaaagagccgcgatgacatcttcctgctggtggac
gcccagggaaaatatctgcagagtaactacgagaaggccgtggagcgcaagaaggagatg
caaggcaaggccaagggcggcggaggtgggccaagaaaccacttgaatgccaagcaggag
cagaacacctggatcggactaattgacttcctgaggcggggcaacatgatgccagtggtg
gctttcactctgtcccgcaatcggtgtgactccaatttggccgctttgcaatcagtggac
ctgaacacggaaaaggagaagggtgccgtgcagaaattcttcctccagtgtctggcaaag
ctgaagccaccggaccgtacaatccctcaggttcttattctcaaggacgctttggagcga
ggaattggtgtgcaccacagcggcatcttgcccattcttaaggagattgtcgagatgctc
tttcaaaatgggctagttaagctgctcttcgccaccgaaacgtttgccatgggtgtcaac
atgcccgcacgcactgtggtcttcgactcctgcaaaaagtatgacggactggagatgcgt
aacctgaaaccaggcgaatacattcaaatggccggcagagctggacggcgtgggcacgac
gagacaggtacggcgatcattatgtgcaagggcagtgtgccgccatcgatggagctacgg
cccatgatcctgggcctgccggagaagctgcagtcacagttcattctgcgctatgcggta
atcctcacatgtctgcgcatcgagagtatcaaggtggaggatatcatgaagttcagtttc
aaggagttcaacctgaagctccaattgcctacgcagcagaagcaacttcgcctggccgaa
gacaagttcgccatgctcccaactctcggcgaacatctgcaaccacttatcaacttttat
gacaaagccgtcgagtattggaaggaaaagcaccgcattatgaaatttgttgttacacaa
cccaagatccaaaaggaactgaaggctggccgcgtcattgtgatcacgcatggcaagcac
tacaacaaactggccattctactcaataccaaatctgttcctggcaaggataccatctat
aaggtgctagtgctggaccatcaattcaaggcaaaggatagcgacagcctccagcaaggc
gagctctatcacaaaatactttcgctgacgcctagaaacatgaccttccagccagaggga
attggaggacacactgttctagacatcaaggctatagacattatcagtatcaccaagagc
acattgaaagtcgatgcagatgcgattatccggaattgggagcaacggcagctggagcgg
ttcaaggactccccgcctagtggatcggtgatcaaggcggtgaccgagctaaaccagctc
aatgagagttacattgacaacccggataacatcaaacacgttaatctttccaaggaaata
atcgtgaacgctgacagcgaggtggccatgctgaactacgttgatcacctgcttcgtcag
gtgggcacatttctgccacataccaacattgccggattcgaacaggagttcgaaaaagtg
tacgagcgccgaatgctggagatccacatcgaggagctgcgcttcattaactccgcgaga
aatttgaccctctatccggactattgtaacaaattgcaggtgctgcgagccctgaagtac
atagatgatctggacgaggttacacttaagggcaaagtggcctgtgagatgggccaaaat
gagctactaatcacggagctcatactgtgcaacatgttcaacgatctcgagccggcagaa
atagccgccttgctctccggccttgtcttccaggcgaagctgcacgataagccggtaata
ccagaggcgttgaaggagtgcgtggcggcatttgagcagatcaacgatacaattcttgcc
gaggagcagcgctttcaggcaaccatctcgaccgataatcgcctgaactttggtctgctg
gaggtggtctacgagtgggctagaaataagccctttgctgagattatgaaactgacgacg
gtgcaggagggcatcattgtacgctgcattcagcagctgaatgaaacgctgcgtgatgtt
aaaacggccgccattcggattggtaatccgggactgcagtcgaagatggaggaggcgtcg
gctgctatcaagcgcgatattgtgttcaccgcatccttgtatacagaactgtag
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integrated database retrieval system
