Drosophila simulans: Dsimw501_GD27168
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Entry
Dsimw501_GD27168 CDS
T01065
Symbol
Dsim_GD27168
Name
(GenBank) uncharacterized protein, isoform A
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dsi
Drosophila simulans
Pathway
dsi03008
Ribosome biogenesis in eukaryotes
dsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Dsimw501_GD27168 (Dsim_GD27168)
09123 Folding, sorting and degradation
03018 RNA degradation
Dsimw501_GD27168 (Dsim_GD27168)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsi03019
]
Dsimw501_GD27168 (Dsim_GD27168)
03009 Ribosome biogenesis [BR:
dsi03009
]
Dsimw501_GD27168 (Dsim_GD27168)
03016 Transfer RNA biogenesis [BR:
dsi03016
]
Dsimw501_GD27168 (Dsim_GD27168)
03036 Chromosome and associated proteins [BR:
dsi03036
]
Dsimw501_GD27168 (Dsim_GD27168)
Messenger RNA biogenesis [BR:
dsi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Dsimw501_GD27168 (Dsim_GD27168)
mRNA degradation factors
5'-3' decay
5' exonucleases
Dsimw501_GD27168 (Dsim_GD27168)
Ribosome biogenesis [BR:
dsi03009
]
Eukaryotic type
Pre-60S particles
RNases
Dsimw501_GD27168 (Dsim_GD27168)
Transfer RNA biogenesis [BR:
dsi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
Dsimw501_GD27168 (Dsim_GD27168)
Chromosome and associated proteins [BR:
dsi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Dsimw501_GD27168 (Dsim_GD27168)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
XRN1_DBM
SH3_12
COG3_N
Motif
Other DBs
NCBI-ProteinID:
KMZ10615
LinkDB
All DBs
Position
X
Genome browser
AA seq
1615 aa
AA seq
DB search
MGVPKFFRYISERYPCLSELAREHSIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEQQI
FQDIFNYVDKLFYLIKPQRLFFLAVDGVAPRAKMNQQRSRRFRSAREAEQLETKAAQRGE
WREHERFDSNCITPGTVFMRRLQEGLRAFLKTKISTDPLWQRCSVILSGQEVPGEGEHKI
MDYIRYMKAQPNFDPNTRHCIYGLDADLIILGLCTHELHFVVLREEVKFGRNVKRTSVEE
TRFFLLHLGLLREYLELEFDALRTVEHKVDVAQLIDDWVLMGFLVGNDFIPHLPCLHISS
NALPLLYRTYIRIYPTLGGNINENGKLNLRRLQIFMSALTEVELEHFKEHADEIKYVNSK
TDTFDTDVDEITESQNHDSDLGALINKSMMLYDDDSEEDCSDEAVLLKEFENYKRNFYRN
KFKRDPQSDLLEELGHHYVNALQWVLDYYYRGVQSWDWYYPFHYSPFISDLKNIEQVEIN
FHLGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPSSPLAEFYPLEFESDLNGKKHDWE
AVVLIPFIDERRLLNAMLPCEAQLSLEERERNQHGPMYVYKYSPEAQGRMPECPPLKALP
VLYCSEVAKWPHEIAVNLPYSVCIELPNAARKVFFPGFPTMQHLPFDFELRNDRVKVFEQ
VSRNQNIVLKPRKSQLEDTLEAVASQYLGQVIHIGWPHLVKAMVVRVATRDQRVDSDGIA
PNDSRRFDSECKALQEHFITRMGIQFANYDVLVYVRTFAGNSTEFHAKGDLVVRDSWSRS
VTGHPAQGVVANLNVWEKSSKHILNVEHYFPVGSSIFLITDPYYGSEGTVQDPRLAYTNG
RIQVSIMVRPEPKVKAARQLQEERDRDYLSTYQVCHLLKISGRTLGRLTGTVWVVLGPRR
QKMENVTKHNIGLQLKYPRQNEERAGYCCRLNNQWYYSSLALDLMRDYCQRYPDVIAFFG
ISNDRAEFVFEQDVFPTAVGHRRVEDLANWVRQQPHMKVERVSCGSKTVCRETVELLIAA
VDELRSLPVKHVKLQVKPHLLLKPNVTLPEVYRKRAVRLFDRVVIVRSIYMVPVGTKGTV
IGINPVTDPNPVRFECVHVVDNFYEVLFDKPVPNCNDIHGIAEDRVYKVPEIALVIIKTD
EEAEKQNDNALTVRDTEPNQAQDEPVRATSSRYVTAAGSTWVPITMKTQIRDEFVKTRGD
PIARTDSYKSSPEPKPVPPEQITNWRERVSTPTTKPQSSPNNWRQNRSSSRQQGGSFMVA
SLTKAPDASASTAFTAFTAATSATVAPQDPTLALMSVLGVGENKDATTPQEAVQQQRPPQ
LLQQKAPFPGQMPNLPKPPLFWQQEAQQHEAQQQKAQKQEQRPQMQQQAQAHVDTQHFYR
SGQTGAALNQPPLGGPPKRQWHQWVNGRTQHANAFHAGVDNGNHMRPNKNIAAQSTFNNN
VRMHLQQPYYPNQQQPLQQRPLQQQPLQQQPFQLTEFNNAPPRYSTIQDFVPIQAYRPKK
FNRVQPAGRQDVDAAKNLCPSSVLQQPTNETIDTKNSSSLPVQSAGEQATGLMQTLKIQQ
PATSQSESDGVSTGGASAATASTSSQAVKKRKPRVPRIGAKFDLEYILPDAPRPT
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcccaagttctttcgctacatcagcgagcgatatccgtgcctcagcgagttg
gcgcgagagcacagcatacccgagttcgacaatctgtacttggacatgaacggcattgtc
cacaattgctcgcatccggacgacaacaacattcactttcacctggaggagcagcagata
ttccaggatatcttcaactacgtagacaagctgttctacctgatcaagccgcagcgcctc
ttcttccttgccgtcgacggggtggctccccgggccaagatgaaccagcagcgcagccgg
cgattccggtcggcgcgcgaggcggagcagctggagaccaaggcggcccagcgaggcgag
tggcgggagcacgagcgcttcgacagcaactgcatcacgccgggcaccgtattcatgcgg
cgtctgcaggagggacttcgcgcctttctcaaaacgaagatttcgacggatccgctgtgg
cagcgttgcagcgtgatcctgagtggccaggaggtgcccggcgagggcgagcacaagatc
atggattacattcggtacatgaaggcgcagccgaactttgatcccaacactcggcactgc
atttacggcctggacgccgatctgatcattctgggtctctgcacccacgagctacacttc
gtggtgctgcgcgaggaggtcaagttcgggcgcaatgtaaagcgcacctcggtggaggag
acgcgcttcttcctactgcacctgggtctgctgcgcgagtacctcgagctggagttcgac
gccctgagaaccgtcgagcacaaagtggacgttgcccagctcatcgacgactgggtgctg
atgggctttttggtcggcaacgacttcattccccacctgccgtgcctgcacatctcatcc
aacgcactgccgctgctctaccgcacctacatccgaatttacccgaccctcggcggcaac
atcaacgagaacggcaagctcaacctgcgccgcttgcagatctttatgtcggccctcacc
gaggtggagctggagcacttcaaggagcacgctgacgaaatcaagtacgtgaactccaaa
acagatacgttcgacacggacgtcgacgagatcaccgagtcacagaaccacgactccgac
ctcggagccctcatcaacaagagcatgatgctctacgatgatgacagcgaggaggactgt
tccgacgaggcggttcttctgaaggagttcgagaactacaagcgaaacttctaccgcaac
aagttcaagcgggatccgcagagcgacctgctcgaggaactgggccaccactacgtcaat
gcgctgcagtgggtgctcgactactactaccgtggcgtgcagtcctgggactggtactat
cccttccactactctccattcatcagcgacctcaaaaacattgagcaggtggagatcaac
ttccacttgggcacgccctttcttccattccagcagcttctggcggtgctgccggcggcc
agtgcgaagctgctccccgtcgcctaccacgatctcatgctgctgccgagcagcccgctg
gccgagttctatccgctggagttcgagagcgacctcaacggcaagaaacacgattgggag
gcggttgtgctgatacccttcatcgacgagcgtcggctgctgaacgccatgctgccatgc
gaggcgcagctgtcgctggaggagcgcgaacgcaaccaacacggccccatgtatgtgtac
aaatacagtccggaggcgcagggtcgcatgccagagtgtcctccgctgaaggcccttccc
gtgctctactgctcggaggtggccaagtggccgcacgaaatcgcagtcaatctgccgtac
agcgtttgcatcgagctgccaaatgcggcaaggaaggtcttcttcccgggatttcccacc
atgcagcatctgcccttcgacttcgagctgcgcaacgaccgcgtcaaggtgttcgaacag
gtcagtcgcaaccagaacatcgtgctgaaaccacgcaagagccagctggaggacaccctg
gaggcggtggcctcccagtacctggggcaggtgatacacatcggctggccgcatctcgtc
aaggcgatggtggtgcgcgtggccacgcgagatcagcgcgtcgacagcgatggaatcgcg
ccaaacgattcgcggcgtttcgactcggagtgcaaggcgcttcaggaacactttatcact
cgtatgggaatacagtttgccaactatgatgtgctcgtctatgtgcgcacctttgccggc
aactcgacggagttccacgccaagggggacctggtagtgcgcgactcgtggagcagatcc
gtcaccggccatcctgcccagggcgtggtggccaatctaaatgtgtgggagaaatcgagc
aaacatatcctcaacgtggagcactacttccccgttggcagttcgatcttcttgatcacg
gatccgtattacggcagcgagggaactgtgcaggacccacgcctggcctacaccaatggc
cgcattcaggtcagcatcatggtgcgaccggaaccgaaagtaaaggcggcacgtcagctg
caggaagagcgggaccgggactacctgtccacctaccaggtctgccacttgctcaaaatc
agtggccgcaccctgggacgcctaactggtaccgtgtgggtggtgctcggtccgcggcgt
cagaagatggaaaacgtgaccaagcacaacattggcctgcagctcaagtatccgcggcag
aacgaggagcgtgccgggtactgctgccgcttgaacaaccagtggtactactccagcctg
gccctggatctgatgcgcgactattgccagcgttacccagacgttatcgccttcttcggt
atctccaacgaccgcgccgagttcgtcttcgaacaggacgtgttccccactgcggttggc
catcgccgcgtcgaggatctggccaactgggtgcgccagcagccgcacatgaaagtggag
cgcgtctcctgcggctccaagacggtctgccgcgagaccgtcgagcttctgatagccgcc
gtcgacgagttgcgctcactgcccgtcaagcacgttaagctgcaggtgaagccgcacttg
ctcctcaagcccaatgtcacactgccagaagtctaccgaaagcgcgcggtgcgtctcttc
gatcgcgtcgtaatcgtacgctccatttacatggtgcccgtgggcactaagggcaccgtg
attggcattaatcccgttacggaccccaacccggtgcgctttgagtgcgtccatgttgtc
gacaacttctacgaggtgctgttcgacaagcccgttccgaactgcaacgacatccacggc
atcgccgaagaccgagtctacaaggtgcccgaaattgccctggtgatcatcaagacggac
gaggaagcagagaagcagaacgacaacgcactgactgtgagggatactgagccgaaccag
gcacaggacgagccagtccgtgcgaccagcagtcgctatgtgactgccgcagggtccacc
tgggtcccgatcacgatgaagacccaaattcgcgacgaattcgtcaagacgcgcggcgac
ccgatagcccgtacggattcatacaagtcatcgccggagccaaaaccggtgccgccggag
cagattaccaactggcgggaacgcgtcagtacgccaacaaccaaaccgcagtcttcgcca
aataattggcgccaaaatcggtcatcatcacgtcaacagggcggtagttttatggttgct
tcgctcacaaaagctcctgatgcatctgcaagcacagctttcactgcattcaccgcagcc
acgtccgcaacggtggctcctcaggatccgaccttggcgctcatgtcggttttgggcgtg
ggggagaataaggacgcgacgacaccacaggaggcggtgcagcagcaacgtccgccacaa
cttctacagcaaaaagctccgtttcccggacaaatgcccaatctacccaagccaccgctt
ttctggcagcaagaggcacaacaacatgaggcgcagcagcagaaggcacagaagcaggag
cagaggccgcagatgcagcagcaggcgcaggcgcacgtggacacccagcatttctacaga
agcggccagacaggagcggcgttaaatcagccgccattgggtggtccaccaaaaaggcag
tggcatcagtgggtgaacgggcgcacgcagcacgccaacgcattccacgctggcgtcgac
aatggaaatcatatgcgccccaacaagaatatagctgcgcagagcacctttaacaacaac
gtgcgcatgcatctccagcagccatactacccgaatcagcagcaacctctccagcagcgg
ccgctccagcagcagccactccagcagcagccattccagctgacggagttcaacaatgcg
ccaccgcgatactcaacgatccaagattttgtgcccatacaggcgtaccgtcccaagaaa
tttaatcgcgtccaaccagccggtcgtcaggacgtcgatgccgccaagaatctttgtcct
tcgtctgtgttgcagcaaccgacgaacgagaccatagacacaaagaacagttctagtctt
cctgtacaatcagcaggcgaacaggcgaccggtctgatgcaaacgctcaaaattcagcag
ccggctacgtcgcagtccgaatctgatggggtctcaacaggcggtgcgagcgctgccaca
gcatcgacatcatcccaggcggtcaagaaaaggaagcctcgagtgcctcgcatcggagcc
aagttcgacttggaatacatactgcccgacgccccgcgtcccacttaa
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