Dactylococcopsis salina: Dacsa_0620
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Entry
Dacsa_0620 CDS
T02378
Name
(GenBank) DNA-directed RNA polymerase, beta'''' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dsl
Dactylococcopsis salina
Pathway
dsl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dacsa_0620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsl03021
]
Dacsa_0620
03400 DNA repair and recombination proteins [BR:
dsl03400
]
Dacsa_0620
Enzymes [BR:
dsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dacsa_0620
Transcription machinery [BR:
dsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dacsa_0620
DNA repair and recombination proteins [BR:
dsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dacsa_0620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AFZ49394
UniProt:
K9YR58
LinkDB
All DBs
Position
complement(635938..639807)
Genome browser
AA seq
1289 aa
AA seq
DB search
MTDKKQPKTIFWNQVVDKKQLKKLIHWAFINYGSASCSAMADALKDMGFHYATKAGVSIS
VEDLQVPPSKREMLDSAETTIAETEERYRIGKITEVERFQKVVDTWNVTSEALKDEVVRN
FQATDPLNSVYMMSQSGARGNLSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEY
IISSYGARKGLVDTALRTADSGYLTRRLVDVSQDLIVREDDCGTERGITVTSMTDGERVL
IPLEERLFGRTLAENVVDPETGEVIAERNQEVDQPLAERIGKTVKTVKVRSPLTCESARS
VCKCCYGWSLAHGKPVDRGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGDIAQQVTAPE
QGTVIVPKKLKTRKVRTRHGEEREQVEVAGEISVQLANGEQKTIAVTPGSLLMANNNETV
EAGQLIVEVATPKKRSTEKATKDVSSDLAGEVLFQDLIPEEKTDRQGNMTRTAQRGGLLW
VLSGEVYNLLPGAEPVVSNGSKVESGDILAETKLITSKGGVVRLGTGKREIEIITASIQL
DQAYIRRSSIGSGEQYIIHSANDQRFALKATPGSKVKHGDVIAELMDDTYRTETGGMVKY
AGVEIDKRGKAKNGYEVTQGGTLLWIPEECHEINKDIGLLRVEDGEYVEAGVEIVENMFC
QSSGIVEVIQKNEILREIIIKSGEVHLSEQEPLCGTDQLVHPGEAITPDLTADSLRYVQY
VETPEGNAILLRPVVEYTIPDEPDIPSQSSMNELGNIQIELKASQRLFYKDGERVKSVNG
IELMRTQLVLNINDEDEPAASKDSLPISVDIELMEREEEEDAYFLQMVILESLAIRRENE
GDAFSGSPQTRILVKDGQEIPPGEIVARTEIQCREAGEVRGIREGGEAIRRVLVARDADL
TIVPITGKAQVEEGDLVVANSPLTKKVVAPESGQVIAVKKDAIVLRNARPYRVSSGAVLH
VDNGSLVQRGDNLVLLIYERTKTGDIIQGLPRIEELLEARKPREACVLAARSGTAQVEYK
DDETVDVKIIEPDGVISNYAIGAGQSMLIADGQTVEAGDPLTDGPANPHEILEVFFQHYT
DQEMGTYEAALRSLQKVQQFLVDEVQRVYQSQGIDISDKHIEVIVRQMTSKVKVEDGGDT
IRLPGELAELRDVHKDNETMSIIGGAPVDYKPNLLGITKASLNTDSFISAASFQETTRVL
TEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSVHEDSLGYALTEEENSLSQNTIYPIPPD
VAEIQSNGDLVDDQTARNYQLSDEELDQE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgactgataagaagcaacccaaaacaatcttctggaaccaagttgttgataaaaagcaa
ctgaaaaaactcattcattgggctttcattaattatggcagtgccagttgttcagcaatg
gcggacgcactaaaagatatggggtttcattacgccacgaaagcgggtgtgtccattagt
gtggaagacttacaagtgcctcccagtaaacgggagatgctggactccgcagaaaccacg
atcgcagaaaccgaagaacgttatcgcattggtaaaattacggaagtggaacgttttcaa
aaggtggtggatacttggaacgtgacctcggaagcgttgaaagatgaagtagtgcggaat
ttccaagccactgatccccttaattccgtttatatgatgtcacagtcgggggcaagagga
aacttgtctcaggtgcgtcagttggtgggaatgcgcggcttaatggctgatccgcaaggg
gaaattattgacctcccgattaaaaccaatttccgagaaggcttgacagttacggaatat
attatttcctcttacggggcgcgtaaagggttggttgataccgcgttacggacggctgac
tcgggttatttgacccgtcgtttggtggatgtgtcccaagatttgattgttcgggaagat
gattgtggaacggaacggggaattactgtcaccagcatgacggatggggaacgagttttg
attccccttgaggaacgtttgtttggtcggacgcttgcggaaaatgtagttgatccagaa
acaggtgaagtgatcgcagaacggaatcaggaagtggatcaaccccttgctgaacgcatt
gggaaaacggtgaaaacggtgaaggtgcgatcgcccttgacttgtgagtcagcgcgatcg
gtgtgtaagtgttgctatggctggagtttagctcatgggaaacccgtcgatcgcggagaa
gccgtaggcattattgccgcgcaatcgatcggcgaaccaggaacccagttaaccatgcgg
acattccacactgggggcgtatttacaggagatattgcccaacaagtgaccgcccccgaa
caaggaacagtgattgtccccaaaaagctcaaaactcgtaaagtgcgaactcgtcacgga
gaagaacgagaacaagtagaagtggcgggagagatttctgttcaactggctaacggtgaa
caaaaaacgatcgccgtgactccaggttcgttgttaatggctaataacaacgaaaccgta
gaagcgggacaattaatcgtggaagtcgccaccccgaaaaaacgatcgaccgagaaagcg
acaaaagatgtttcctccgacttagcaggagaagtcttattccaggacttaattcccgaa
gaaaaaaccgatcgtcaggggaacatgacacgcaccgctcaacgggggggactattatgg
gtgctatcaggagaagtgtataacctcctgcctggggcagaacccgtcgtcagcaacggc
tcaaaagttgaatcgggagacattcttgcggaaaccaaactaatcaccagcaaaggcggt
gtggttcgtctcggtactggaaaacgggaaatcgaaatcatcaccgcttccatccaatta
gatcaggcttacattcgtcgttccagcatcgggagtggtgaacaatatattatccactct
gctaatgatcaacgctttgccttaaaagccacccctggcagcaaagtcaaacatggcgat
gtgattgccgaattaatggatgatacttatcgcacagaaacgggcggtatggtgaaatat
gcaggggtagaaattgataagcgcggcaaagcgaaaaatggctatgaagtgacccaaggc
ggaacgctgctttggattcctgaagaatgccacgaaatcaataaagatatcggcttactc
cgtgtggaagatggagaatatgttgaggctggtgtggagattgtagaaaatatgttctgt
caatcttcgggaattgtagaagtcatccagaaaaatgaaatcctgcgggaaatcattatt
aaatcgggagaggttcatctgagtgaacaagaacccctttgtggtacggatcaattggta
catccaggagaagcgattacccctgatttaacggcggattctctgcgttatgtgcagtat
gtggaaaccccagaaggaaacgcaattctgttgcgtcctgtggtggaatataccattccc
gatgaacctgatattccctctcaaagttcgatgaatgaattggggaatatacaaattgaa
ctgaaagcctcccaacgcttgttttataaagacggagaacgggtgaagtcggttaatggt
atagaattgatgcgaactcaattggttctcaatatcaatgatgaagatgagccagcagcg
agtaaagattcgctaccgattagtgttgatattgaattgatggagcgtgaagaggaagaa
gacgcttatttcttacagatggtgattctcgaatctttagcgattcgtcgagaaaatgaa
ggggatgcgtttagtggtagccctcaaactcgcattttggtaaaagatggacaagagatt
cccccaggggaaattgtcgctcgaaccgaaatccaatgtcgagaagcaggtgaggtgcga
ggaatccgtgaagggggcgaggcgattcgtcgggtgttagtggcgcgagatgctgattta
acgatcgttccgattacagggaaagcacaagtggaagaaggggatttagtggtagcaaat
tctcctctcactaaaaaagtggttgccccagagtctggacaggtgattgctgtcaaaaaa
gacgcgatcgtgctgcgaaatgcccgtccttatcgggtgtctagtggtgcggtgttgcac
gtggataatggcagtttagtgcaacgaggagataacctcgtcttactgatttatgaacga
accaaaacgggggatattattcaaggattacctcggattgaggaactgttggaggcgcgg
aagccacgagaggcttgtgttctcgccgcccgttcgggaacagcgcaagtggaatataag
gatgatgaaaccgttgacgtgaagattattgaacccgatggggtgatcagtaattatgcc
attggtgcgggacaaagtatgttgattgctgatggacaaacggttgaggctggtgatccc
ttgaccgatggcccagcaaatccccacgagattctagaagtcttctttcaacattacaca
gatcaagaaatggggacttatgaagccgcacttcgcagtttgcaaaaagttcaacagttt
ttagtggatgaagtccaacgggtttatcagtctcaagggattgatatttctgataaacat
attgaggtgattgtccgtcagatgacttctaaggtgaaggtagaagatggtggcgatacg
attcgcttacctggagagttggcagaattacgggatgtgcataaggataacgaaactatg
tcgattattggtggcgcaccagtggactataaacccaatttattggggattacgaaagcc
tctctcaataccgatagctttatcagtgcggcaagtttccaagagacaactcgcgtcttg
accgaagccgcgatcgagggcaaatctgactggttacgtggcttaaaagaaaatgtgatc
attggacgtttaattccagcaggtactgggtttagtgtccatgaggattcgttgggatat
gctttaactgaggaagaaaattctctcagtcagaatacaatttatccgattcctcctgat
gttgctgaaattcaaagcaatggcgatctcgttgacgaccaaacggcgcgtaattatcag
ttgtctgatgaggagttggatcaggagtaa
DBGET
integrated database retrieval system
