Dactylococcopsis salina: Dacsa_1113
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Entry
Dacsa_1113 CDS
T02378
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsl
Dactylococcopsis salina
Pathway
dsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dacsa_1113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsl03400
]
Dacsa_1113
Enzymes [BR:
dsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dacsa_1113
DNA repair and recombination proteins [BR:
dsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dacsa_1113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFZ49816
UniProt:
K9YSA2
LinkDB
All DBs
Position
1115820..1119302
Genome browser
AA seq
1160 aa
AA seq
DB search
MAFASVIRTIARSRLTQELLQTLEQNQTLKLTGIPRLPKGLIASAFSQPSQHLFVICATL
EEAGRWATQLQTMNWKTVQFYPTSEATPYEGFNPESEMIWGQIQVLLTLIENADNPLAVV
ATEKSLQPHLPPKAVFENSCLSFSKGMTLDSKTIDRRLTELGYERVSLVETEGQWTRRGD
LVDIFPVASELPIRLEWFGDELEQLREFDPVSQRSLDQIETLTLTPTSYSPLIAKGIIEQ
GNLDRVNDHLSPEEQSAIEEQNYPNGMNRFLGFAYSQPASLLDYLPDQTLIVLDEPEQCH
AHSDRWLEHTEDQYLEYNPQQDLPRLHTDLKTSLENAKSFYQLHLSEISEENDKGVNLAS
RPLPVTPHQFAKLAEIIRGKREIYNGMTLKDYNTWIVSAQPSRSVSLLQEHDCPAQFVPN
PKDYPAIEKSHRDHTAVAVKYSGLGELEGFILPTFRIAIVTDREFFGQHVLTTPSYIRKR
RRAASKQVDLNKLRPNDYVVHRQHGIGKFLRLESWETREYLVVEYADGLLRVPADSLDSL
SRYRHLGEGKPQLNRMSGKSWQNTKNKVEKAVKKVAVDLLDLYAKRSQLSGYAYPQDTVW
QQELEDSFPYQATPDQLKAVQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKIVMSG
KQIAFLAPTTILTQQHYHTLKERFAPYPINIGLLNRFRTSNERKDILKRLATGELDIVVG
THQLLNKSVKYKDLGMLVIDEEQRFGVNQKEKIKAMKTEVDVLTLTATPIPRTLYMSLSG
IREMSLITTPPPSRRPIKTHLSPYDTEAIRTAIRNELDRGGQVFYVVPRVEGIEETAGKL
REMVPGARISIGHGQMEEAELESTMLTFNNGDADILVCTTIIESGLDIPRVNTIVVEDSQ
KFGLSQLYQLRGRVGRSGVQAHAWLLYPKQSSLSDTAKKRLRALQEFTQLGSGYQLAMRD
LEIRGVGELLGAKQSGQMNAVGFDLYMSMLQEAIQEVQGQDIPQVEDTQIDLKLTAFVPS
NYITDPDQKMDAYRTVTMANSKKELDQIRNDWRDRYGELPAPVNQLLQIMELKQITKSLG
FSRIKPEGKQHIVLETKMEEPAWKRVQEHLPKKIASRFVYSKGKVTVRGLGVLKTQQQID
NLINWLGQLRESLEQESAMI
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgcttcagttattcgcacgatcgcccgatcgaggctaactcaagaactctta
cagactttagaacaaaatcagactctcaaactaactggaatcccccgtctccccaaagga
ctcatcgcctcagcatttagccaaccgtcacaacatctttttgtgatctgtgcaacttta
gaggaggcgggacgatgggcgacccaattacaaaccatgaactggaagacggtacaattt
taccccacttcggaggcgactccctacgaagggtttaacccagaatcggagatgatctgg
ggacaaattcaagtcttattaactctcattgaaaacgcagacaatcccctcgcggttgtc
gcgacagaaaaatccctacaaccccatcttcccccgaaagcggtttttgaaaattcctgt
ctctctttctcgaaaggaatgacattggatagtaaaacgatcgatcgccgtctgactgaa
ttaggatatgaacgagtctctctcgtagaaacagaaggacaatggactcgcagaggagac
ttagttgatatttttcccgtcgcttccgaactcccgatccgtttagaatggtttggggat
gagttggaacagttacgggaatttgatcccgtaagtcaacgttctctcgatcaaattgaa
accttgaccttaactcccactagctattctcccctcattgcgaaaggaattattgaacaa
ggaaatctcgatcgcgtcaacgatcatctttccccagaagaacaaagtgcgatcgaagaa
caaaactatcccaacgggatgaaccgctttttaggattcgcctactctcaacctgcgtct
ttattagactatcttcccgatcagactctcattgtcctcgatgaacccgaacaatgtcac
gcccacagcgatcgatggttggaacacaccgaagatcaatatctggaatataatccccaa
caagaccttcctcgtcttcacactgacttaaaaactagcttagaaaacgccaaatctttc
tatcaactccatctttctgaaatcagcgaagaaaacgacaaaggcgttaatcttgcgagt
cgtccgcttcctgtaacccctcatcagtttgccaaactcgccgaaatcatccgagggaaa
cgagaaatttacaacggaatgaccctaaaagattacaatacttggattgtttccgcacaa
ccgtctcgatcggtctccctactccaagaacacgattgtcccgcccaatttgttcccaac
cccaaagactatcctgcgatcgaaaaatctcatcgtgatcatacagcagttgcggttaaa
tactcaggattaggagaactcgaagggtttattctccccaccttccgtattgccattgtc
accgatcgagaattttttggacagcacgttttaaccacacccagttacattcgcaaacgt
cgccgcgccgcctctaaacaggttgatcttaacaaactgcgtcccaacgattatgtggtt
catcgtcaacatggtatcggaaaatttctcagactggaaagttgggaaaccagagaatat
ctcgtcgttgaatacgccgatggcttactgagagttcccgccgatagtttagactctctc
tcccgttaccgtcatctgggagaagggaaaccccaactgaatcggatgtcggggaaatca
tggcaaaataccaaaaataaggttgagaaagcggttaaaaaagtcgctgttgatttattg
gacttatacgcgaaacgatcgcagctttcgggttatgcttatccacaagatacggtttgg
cagcaagagttagaagactcgtttccttatcaagcaacacccgaccaattaaaagcggtt
caagatgtcaaacgagacttagaaagcgatcgaccaatggatcgtctggtttgtggggac
gtgggatttggcaaaactgaagttgctatccgtgccatttttaagattgtcatgtcgggg
aaacaaatcgcctttctcgcaccgacaaccattctcacccaacaacattatcacaccctc
aaagaacgttttgccccctatcccatcaacattggacttctgaatcggtttcggacaagt
aacgaacggaaagacattttaaaacgtcttgcgacaggtgaattagatatcgtcgtcgga
acacatcaactgctaaataaaagcgtcaaatacaaagatttaggaatgttggtgattgat
gaagaacaacggtttggggttaatcaaaaagagaaaatcaaagccatgaaaaccgaggtg
gatgttttaactctcaccgcaacaccgattcctcgcaccctgtatatgtccttgtcaggg
atacgagagatgagtttgattaccactcctcccccctcccgtcgtcccattaaaacccat
ttgtctccttacgatactgaagcgatccgaactgccattagaaatgaactcgatcgcggc
ggacaagtgttttatgtcgttcctcgtgtggaaggaatcgaagaaacggcgggaaaatta
agggaaatggttcctggggcgagaatttcgatcggtcatggacaaatggaagaagcggaa
ttagaatcaaccatgttaaccttcaacaatggcgatgctgatatcctcgtttgtacaacg
attattgaatcggggttagatattcctcgcgtgaataccattgttgtggaagattcccag
aaatttggcttatcccaactgtatcagttacggggaagagtcggtcgatcgggggttcaa
gcccatgcgtggttattatatcccaaacaaagcagtctcagcgataccgcaaaaaaacgt
ctccgcgccttacaggagtttacccaattagggtcaggttatcaactggcgatgcgagat
ttagaaattcgtggcgttggggaattattaggggcgaaacagtctggacaaatgaacgcg
gttgggtttgacttgtatatgagtatgctacaagaggcgattcaagaagtacaaggacag
gatattccacaagttgaagacactcaaattgatttgaaattaaccgcatttgttcctagt
aattatattactgatcctgatcaaaaaatggatgcttatcgcactgtaaccatggcgaat
agtaagaaagaattagaccaaattcgcaacgattggcgcgatcgatatggagaattaccc
gcacccgtaaatcaattattgcagatcatggaattaaagcaaattactaaatccctcggt
ttttctcggattaaacccgaaggaaaacagcacattgttttagaaacaaaaatggaagaa
cccgcttggaaacgagtacaagaacatctcccgaaaaaaattgcttctcgctttgtttat
agtaagggaaaagtaaccgttcgcggtttaggggttttgaaaacacagcaacagatagat
aatttaattaattggttaggacaattgagagaatctttagaacaagaaagcgcaatgatt
taa
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