Dactylococcopsis salina: Dacsa_1366
Help
Entry
Dacsa_1366 CDS
T02378
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dsl
Dactylococcopsis salina
Brite
KEGG Orthology (KO) [BR:
dsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsl03016
]
Dacsa_1366
Enzymes [BR:
dsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dacsa_1366
Transfer RNA biogenesis [BR:
dsl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dacsa_1366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFZ50060
UniProt:
K9YUM9
LinkDB
All DBs
Position
complement(1390162..1392165)
Genome browser
AA seq
667 aa
AA seq
DB search
MEKGTLIEFKAQGERRLAVAERPEGKKHWIVLDQWGQSHTLHPRQVEYEVGGDPKRPQEI
PSFLGEVESYLDPSSLEVAWELLVEDGEAVTPEEMAAVLFSDQSAIPCYAAYCLLTEDKI
YFKQKGNVFEPRSSSQVAEIKHQLEVEQQRNLEKTEFIQRVKQALAGESVDWKSSDRARF
EALEKSILQPDLEVRLAKETLAELGREQSSDSAFNLLIDIGLWSRHENLFLRRSSYPIQF
PQKVLDVAQQYVDSPPDDLERDRLDLTHQKVYTIDDESTKEIDDGVSVEILPDGRQQIWI
HIADPTRLVRPDDELDQEARRRSTSLYLPTGMISMFPSELATGPMSLIQGKVCPAMSFAV
ILAEDGAVAEYTIAATWVKPTYRLTYDDVDEMLELGVTAEPEIAQLAHWAQQRKQWRQSQ
GSINISLPEAVIKVNQEEEVEIELLEESQARELVAEMMILAGEVAGRFAVDKEIPIPFRS
QPQPELPPEETLLQLPAGPVRSCALRGCMPRSEMGTTPARHAGLGLEVYTQVTSPIRRYV
DLLSHFQIKAYLRGEACPFTTEQVQEVAFSAASATYEATLVERQTRRYWALEYLRRHSDE
RWNAIVLRWLREDDNLGIILLEDLGLELPHRFQTNVELGDRVEVEVVAADPHQDLIRFRE
FVESTVN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaagggaacgctgatcgaatttaaagctcaaggagagcgtcgtctggcagtagca
gaacgaccagaagggaagaaacattggattgttttagatcaatggggtcaatctcacacg
ctacatccgcgacaggtggagtatgaggtgggaggtgatcccaagcgcccacaggaaatt
cctagttttttgggggaagtggagtcttatttagacccatcaagtttagaagtggcttgg
gaattgttagtagaagacggggaagcagtgactcccgaagaaatggcggcggtgctattt
tcggatcaaagtgcgatcccctgttatgcggcgtattgtttgctaacagaagataaaatt
tattttaagcagaaaggaaatgtttttgaaccgcgatcgtcctctcaggtagcggaaatt
aaacatcagttagaagttgaacaacaacggaatctggaaaaaactgagtttattcagcga
gtgaaacaggctttagcaggggagtcggtagattggaaaagctccgatcgcgctcgtttt
gaggctttggaaaaatccattttacaacccgatttagaagtccgtttagcaaaagagacg
ttagcggagttaggacgggaacaaagttctgattctgccttcaatcttcttatcgatatc
ggcttatggagtcgccatgaaaaccttttcttgcgtcgtagctcctaccctatacaattc
ccccaaaaggtgttagatgtggcgcaacaatatgtcgattcccctcccgatgatttagag
cgcgatcggttagatttaactcaccagaaagtttacaccattgacgatgaaagcacaaaa
gaaattgatgatggggtgagtgttgaaatcctacctgatggacgacaacagatttggatt
catatcgctgatccgacacgcttagtaagacctgatgatgagttggatcaagaagctcgc
cgacgcagtaccagtttatatcttcccactggcatgatttccatgtttccctcggaatta
gctacgggtcccatgagtttgattcagggaaaagtttgtccagcgatgagttttgccgtg
attttagcagaagatggggcggttgctgaatacacgatcgcggcgacttgggttaaaccc
acttatcgcctcacctatgatgatgtggatgagatgttagagttgggcgttactgctgaa
ccagaaattgctcagttggcacattgggcgcaacaacggaaacaatggcgacagtctcag
ggatcaattaacatcagcttaccagaagcggtgattaaggtgaatcaggaagaagaggtg
gaaattgagttattagaggagtcacaagcgcgagagttagtggcggaaatgatgattcta
gcgggagaagtggcgggacgttttgcggtggataaagagattccgattccgtttcgatcg
cagccacagccagaattaccgccagaggaaaccttattacaattgcccgctggaccggtt
cgatcgtgtgcgctacggggttgtatgccgcgcagtgaaatgggaacaacaccagcccgt
catgcggggttaggcttagaagtttatacacaggtgacttctcccattcgccgttatgtg
gatttattgtctcattttcaaattaaagcctatttgcgcggtgaggcttgtccatttacg
acggaacaggtgcaggaagtggcgtttagtgccgctagtgccacttatgaagcaacgtta
gtggaacggcaaacgagacgatattgggctttggaatacttacgccgtcatagcgatgaa
cgctggaacgcgatcgtgttgcggtggttgcgagaagatgacaatttggggattattttg
ttggaagatttagggttagaattaccgcaccgtttccagacaaatgttgaattgggcgat
cgagtggaagtggaagtcgtcgccgctgatccccatcaagatttaattcgctttcgggag
tttgttgaatctacggtgaattag
DBGET
integrated database retrieval system
