Dactylococcopsis salina: Dacsa_2346
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Entry
Dacsa_2346 CDS
T02378
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dsl
Dactylococcopsis salina
Pathway
dsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dacsa_2346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsl03019
]
Dacsa_2346
Messenger RNA biogenesis [BR:
dsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dacsa_2346
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFZ50957
UniProt:
K9YWR9
LinkDB
All DBs
Position
complement(2381386..2383302)
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AA seq
638 aa
AA seq
DB search
MSQPIKNQNKPIIKKKQPMSNNESQSNLRIIPLGGLHEIGKNTCIIEYEEEMILLDAGIG
FPDEGMHGINVVLPDMTYLRENQHKIKGMIVTHGHEDHIGGIVYHLKQFEIPVIYGPRLA
LALLQNKLEEAGIADQTILKPVLPRETVKLGSAFSVEFIRNTHSIADSCCVAMTTPLGVV
IHTGDFKVDHTPVDGEHFDFHRLAEYGEKGVLCLLSDSTNAESPGHTPSEESVRPNLDRV
FAEAEGRLFLTTFASSVHRVSIILDLAQKHNRVVGVVGRSMLNVIAHARNLGYIKCPDDL
FVPLKELNKIPDERVVILTTGSQGETMAALTRISKGEHRQVRIKPNDTVVFSANPIPGNT
IAVVNTIDRLMMIGAKVIYGRQLGIHVSGHGSQEDHKLMLALTKPKFFVPFHGEHRMLVK
HAGMAHQMGIPKENMVIINNGDVVELSRDRIQVTDQVQSGIELVDHSGIVHKDIMSERQQ
LALDGLITVAVAVGSNGEVLAQPEVNLRGVVSPLAPAKITDLIVRSVEQTIEKYWGNLAT
NGNGKPIDTDIDWTGLKVEIETGLKRMLRRELKSQPTTVCLLQTPRGKQVKAKSNGKLPQ
PVKSNSSDNNGNGNGNGVEVKQDFRGRRRRRRSASVSS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaccaatcaaaaatcaaaacaaaccaatcatcaaaaagaaacaacccatgagt
aacaatgaatcacaatctaacttgagaattattcctctcggtggattgcacgaaatcgga
aaaaatacctgcatcattgaatatgaagaggaaatgatcctattggatgcgggaatcggt
tttcctgatgagggaatgcacggaattaatgtggttttacccgacatgacttatttacgg
gaaaaccagcacaaaattaaaggaatgattgtcactcatggccatgaagaccatattggt
ggcattgtttatcatcttaaacagtttgagattccagtgatttatggcccccgtctggct
ttggcgttattgcaaaataagctagaagaagcgggaatcgcggatcaaaccatcttaaaa
cccgtgcttccccgtgaaaccgttaaactcggtagtgcgttttcggtggagtttattcgc
aacacccattccatcgcggatagttgctgtgtggcgatgacaactcctctcggtgtggtc
attcatacaggagatttcaaggtggatcatacgccagtggatggggaacattttgatttc
catcgtctcgccgaatatggggagaaaggggtgttatgtttattgagtgattctaccaac
gcagaaagccctggacacacgccttctgaggagtcagtccgaccaaatctcgatcgcgtt
tttgccgaagcggaggggcgcttattcctcactacgtttgcgtcttctgtacatcgggtg
agcattattctagatttagcacaaaaacataaccgtgtcgtgggagttgtgggtcgatcg
atgctgaatgtcatcgctcatgctcgtaatttaggatatatcaaatgtcccgatgatttg
tttgtccccttaaaagaattaaataaaattcccgatgaacgagtggtgattctgacgact
ggttctcaaggggaaaccatggcggcgttgaccaggatttctaaaggagaacaccgtcag
gtgagaattaaacccaatgataccgttgtgttttccgcgaatcccattcctggcaatacg
atcgcagtggttaacacgatcgatcgactgatgatgatcggcgcaaaagtgatttacggt
cgccagttagggattcatgtgtcgggacacggttcacaggaagatcacaagttaatgtta
gcgttaacgaaaccgaaattctttgttccgtttcacggcgaacatcggatgttggtgaaa
cacgcaggaatggcgcatcagatggggattcccaaagaaaacatggtcattattaacaat
ggtgatgtggtagaactgtcgcgcgatcggattcaggtaaccgatcaggttcaatcagga
attgaattagtcgatcattcgggtattgttcacaaagatattatgagtgaacgtcagcaa
ctggctttagatggtttaattaccgttgcggttgctgtggggtcaaatggtgaagtttta
gcgcagccagaagttaatcttcgtggtgtcgtcagtcccctcgcgccagcaaaaattacc
gatttgattgtccgtagtgtggaacaaaccattgagaaatattggggaaatttagccacc
aatggtaacgggaaacccattgacactgatatcgactggacaggattaaaagttgagatt
gaaacaggtttgaagcgaatgttgcgacgggagttgaaaagtcaacccacaaccgtctgt
ttgttacaaaccccaagagggaagcaagtaaaagcgaaaagcaatggtaaacttccgcaa
cccgtgaagagtaactctagcgacaacaatggtaatggtaatggtaatggcgttgaggtg
aaacaagattttcgcggtcgtcgtcgtcgtcgtcgatcggcttcggtttcctcttaa
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