Dactylococcopsis salina: Dacsa_3216
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Entry
Dacsa_3216 CDS
T02378
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dsl
Dactylococcopsis salina
Pathway
dsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dacsa_3216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsl03019
]
Dacsa_3216
03009 Ribosome biogenesis [BR:
dsl03009
]
Dacsa_3216
Enzymes [BR:
dsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dacsa_3216
Messenger RNA biogenesis [BR:
dsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dacsa_3216
Ribosome biogenesis [BR:
dsl03009
]
Prokaryotic type
rRNA helicases
Dacsa_3216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Helicase_C_2
Fe-ADH
AAA_19
AAA_22
Sigma70_r4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFZ51737
UniProt:
K9YZ32
LinkDB
All DBs
Position
3312346..3313749
Genome browser
AA seq
467 aa
AA seq
DB search
MTISFQSLGLSEERVKQLEKLGFEQPTDVQSQAIPELLKGKDVVGQSQTGTGKTAAFSLP
LLEQIDVEDTVVQALILTPTRELAQQVTTAMKTFSHDRALKILTVCGGQPIDRQIQTLKR
GVQVVVGTPGRVIDLLNRKALRLNTLRYVVLDEADEMLSMGFIDDVREILKQAPEQRQTA
CFSATMPRQIQDLINQFMDHPVSLKVEQPKGTPQRIEQRAYKIPRGWTKGKALKPILAVE
NPESALIFVRTKRTASEITQELQAAGYSADEYHGDLSQSQRERLVQRFRKSQVRLVVATD
IAARGLDVQDLSHVINFDLPDNVETYIHRIGRTGRAGKTGVAISLSQPRDQNTIRQIERR
LRERLNLVNIPSRAEIEAQRLEKLREELHGSLGGERMASFLPLVRELGDEYDAHAVAAAA
LQMIYDQSRPQWLDENWQDPPSGSPKPKPRNKRNSKPSVRSTSGDRR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgacgatttcatttcaaagtctaggactctccgaagaacgagtaaaacagttggagaaa
ctaggcttcgagcaaccgaccgacgtacaatcacaagcaatcccagaacttctaaagggt
aaggacgtagttggtcagtcccaaaccggaacaggaaaaacagcagcgttctcgttgcct
ctgttagaacaaattgacgttgaagatacagtcgttcaggctttaatcctgacaccgaca
cgggaacttgctcaacaagtgaccacagccatgaagacattttctcacgatcgcgcctta
aagattttaacggtttgtgggggtcaacccatcgatcgccaaatccaaactttaaagcga
ggcgtgcaagtggtggtcggaacaccaggacgagtcattgatttactcaaccgtaaggct
ttacgtctgaataccctacgctatgtcgtcctcgatgaagcggatgagatgctcagtatg
ggattcattgatgatgtgcgtgagattctcaaacaagcaccagaacaacgtcaaaccgct
tgtttctccgcaacgatgcctcggcaaatccaagacttgattaatcagttcatggatcat
cccgtgagcttaaaagtggaacagccgaaagggactccccaacgcattgagcaacgcgct
tacaaaattcctcgtggctggacaaaagggaaagcactgaaaccaattttggcagtagag
aacccagagtcagctttgatttttgttcgtaccaagcgcaccgccagtgagattactcaa
gagttacaagctgcgggttacagcgccgatgaatatcatggggacttaagccaaagtcaa
cgggaacgattagtacagcgtttccgtaaaagccaagtgcgtctggtggtcgccactgat
attgctgctcgtggtttagatgttcaagacctttcccatgtgattaactttgatctgcca
gacaatgtggaaacttacatccatcgcattggacggacaggacgcgcgggtaaaacgggt
gttgccatcagtttaagtcaacctcgtgaccagaatacaattcgccaaattgaacgacgg
ttacgtgaacggttgaatttagttaacattcccagccgtgctgaaatcgaagcgcaacgt
ttggaaaaactacgggaagaattacatggcagcttaggaggagagcggatggcttctttc
ttgcctttggtgcgagaattgggtgatgagtatgatgctcatgctgtcgccgccgctgct
ttacaaatgatttacgatcaaagtcgtcctcaatggttagatgaaaactggcaagacccc
cccagtggcagtccgaaaccaaaacctcgtaacaaacgtaattctaaaccctccgttcgt
tcgacttctggagaccgacgttaa
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