Dactylococcopsis salina: Dacsa_3274
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Entry
Dacsa_3274 CDS
T02378
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dsl
Dactylococcopsis salina
Pathway
dsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dacsa_3274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsl03019
]
Dacsa_3274
03400 DNA repair and recombination proteins [BR:
dsl03400
]
Dacsa_3274
Enzymes [BR:
dsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dacsa_3274
Messenger RNA biogenesis [BR:
dsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dacsa_3274
DNA repair and recombination proteins [BR:
dsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dacsa_3274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFZ51786
UniProt:
K9YXW8
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All DBs
Position
3368963..3370393
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AA seq
476 aa
AA seq
DB search
MDWEQVRDRLQTVWGYPDFRPPQGEIVRCLLEKKDVLVVLPTGGGKSICFQLPALLQTGL
TLVVSPLVALMENQVQDLKQRGLPAASFHSEIDRRQRKEILKQLESQALRLLYLSPESLL
SPHIWERLIAPELMINGLMLDEAHCLVQWGETFRPAYRRLGVVRETLLQFKPQGSQISIA
AFTATADLEACQTIETALKLQTPTYFKESPYRQNLQLQVKRVCTPAQRKQNLLSFIQQRK
QQSGLIYARSRSVTETLSQWLNNKGYKSEPYHAGLSAGERRSIEEKWLEGRRQFVIATCA
FGMGINKPDLRWVVHYQPPLLLSEYLQEVGRGGRDGNRATALTLVSEPTGLLYPEDKQRE
QYFIRQLRQQYQKARELMKRIPTEGKVATVEEISPHGAIVLALLHGCGQLEWLDPFHYRL
LSRKQTPVNLSKILKPPQQMNQFLSTRECRWRFLLEAFGFTSQGFRCGNCDRCLRQ
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggattgggagcaagtgcgcgatcgattacaaaccgtttggggctaccccgattttcgt
ccgccacagggggaaattgtccgttgtctcctagagaaaaaggatgttttggtggtatta
cccactggaggcggtaagtcgatttgtttccaattacctgctttattacaaacggggtta
acgttggtggtttctcctctagtggcgttgatggagaatcaagttcaagatttaaaacag
cgaggattacccgccgcgtcgtttcatagtgagatcgatcgtcgccaacgaaaagagatt
ctaaagcaattggaaagccaagccttgcgtttgctgtatctttccccagaaagtctattg
agtccgcacatttgggagcgcttaattgcaccagaattaatgattaatggcttgatgctt
gatgaggctcattgtttagtacagtggggggaaacgtttcgtcccgcctatcgccgttta
ggggtggtgagagaaaccttattacagtttaagcctcaagggagtcaaatctcgatcgcc
gcgtttaccgcaaccgcagatttagaagcctgtcaaaccattgaaacggcgttaaagttg
caaaccccgacctattttaaggaaagtccctatcgtcagaatttacagttacaggtgaaa
cgggtttgtacaccagcacaacgtaagcaaaatttactctcttttattcagcaacggaaa
cagcagtcaggattaatttacgctcgatcgcgatcggtgacagaaactttaagtcaatgg
ttaaacaataaaggttataaaagtgaaccttatcacgctgggttaagtgctggagaacgg
cgctcgatcgaggaaaagtggttagaagggaggcgacaatttgtaattgcgacttgcgcc
tttgggatgggaattaataaacctgatttacgctgggtggtgcattatcaaccgcccttg
ttattatcagaatatctccaagaagtaggacggggaggaagagatgggaaccgcgccact
gctttgaccttagtcagtgaacccacaggtttactttaccctgaagacaagcaacgagaa
cagtattttattcgccagttacgtcagcaatatcagaaagctagggaattaatgaaaagg
attcccacagaaggaaaagtggcgacagtagaagaaatttcccctcacggcgcgatcgtg
cttgctttgcttcatggttgtggacaattagaatggcttgatccgtttcactatcggcta
ctgtctcgaaagcaaacaccagtcaacctctccaagatattgaaaccgccgcaacagatg
aaccaatttttatcaactcgtgagtgtcgctggcgatttttgttagaggcgtttgggttt
acttcgcaagggtttcgttgcggaaattgcgatcgctgtttacgtcagtaa
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