Diprion similis: 124405117
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Entry
124405117 CDS
T08947
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
dsm
Diprion similis
Pathway
dsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124405117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsm03021
]
124405117
03019 Messenger RNA biogenesis [BR:
dsm03019
]
124405117
Transcription machinery [BR:
dsm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124405117
Messenger RNA biogenesis [BR:
dsm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124405117
U7-dependent histone pre-mRNA processing factors
124405117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124405117
NCBI-ProteinID:
XP_046735707
LinkDB
All DBs
Position
4:12603527..12614103
Genome browser
AA seq
1113 aa
AA seq
DB search
MDPRLHRRQEPEKKGSSDLVVEWLNDASMSTSESVKLTNLAKVNEFLIHKEPKLLDLYLD
ETLQFSLDRSSEVRKLIAGFLEEAGCKQPDLIPRLVQTLARLVGDDASAVIKRALRAAGR
ILRATLKWISSVAIITTDMELAWTQLSNLKVEIINMIDSDNDGIRTQAVKFLEGVVLLQT
YPDPDAPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMG
SLALIAKTRPQFMRQVIQALQLLQHDLPPTLSDSQVTSVQKQLKLTLLGLLKHPASIEFA
ATMARQLNQLGAREQEIMKAYPKVEDIRKMKKRQQETAAASAAKRAKLEAAIAIEEPEQQ
PMEIEPVKPPELIELSENFIGDRLSVEIATELVMDSMAWVPDIMTTVFQREYQPTSTTDI
NVQRQTIARLLAAQIKQAKAKRVKRETKEEDAVMEDLIKNPTITVAEAKRERKREKDREK
EKEAKASLEAHEKSLKMAKNRLKTLKLSEITKPLQREAKEKMLLMAVGRILGAERIAVLG
GVAPVRSKILTTLAATFNPYIREAVLRYITEDMRSRLDLALGWLYEEYALLQGFQRRTTL
TSKPQEAPHQAYNFLLCTLVSAIDLVPGKDRDVLLSRLYLEAPLITEDAVEALKLVSSDE
TRGLAPLELLKEMVIRRPTKQLVFLNVLLCHTGHENNTIREAAIEFVVQLYGRPELGKLI
EEYAVLYLGFLRLPNPPEIVFGQDRGRPQIDDQWSESTTRACLGLYLALLSEHQDLIHEL
ARVYTSMGADVKRIILRLVEGPVRLLGMSSPQLLSLVENCPKGAETLVTRVIHILTEKSA
PSAELVAKVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGT
HNNDSGIPHMSPITPAELLIALHTIDTSKAELKTVIKATSLCFAEKQVYTQETVAVVMQH
LMEMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQHKVWEGFVKCCERTQP
QSFSVILQLPPAQLAEALKMSPGLKAPLLAHVESFAENQKAHIPQSIMDVIQGKMLPVVA
DEFDIAPPGEYPLELKSEPMDTDPSEPAPPGLD
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggacccacgcttacacagaaggcaagagccggaaaaaaagggctcgagcgacttggtc
gtagaatggcttaatgatgcttctatgagcacaagcgaatcggtaaaattaacaaatttg
gctaaagtcaacgagttcttgatacataaggaacccaaattgctggatttatacttggac
gaaacgttgcaattctctctagataggagtagcgaagttagaaaacttatcgcaggattt
ttggaagaagctgggtgcaaacagcctgacttgattcctcgactagtccaaacactcgca
agattagttggagatgatgcatcagctgtaatcaagcgggcacttagagcagcgggaaga
attctcagggcgacattgaaatggatatcaagtgttgcgattatcacaacagacatggag
ctcgcttggactcaactgagcaatctcaaggttgagataataaatatgatcgacagtgac
aatgacggaatcagaacccaggcagtaaagttcctggaaggagttgttttactgcaaaca
tatccagatcctgatgccccgaaaaagcctgacgatttctccttggaagatattccatta
acactaaaaatagctcggagaagaaaactggaggaagaggcaaaccatgttatggatttg
ttgatcaaattccacggttctccgcatgttagcagcgtcaatttgatgacttgtatgggg
tccttagcattgattgctaaaactaggcctcagtttatgcgtcaagtaattcaagcctta
caactcctacagcatgatctgccaccaacactgtccgattcacaagtaacgagtgtccag
aaacaacttaagctcacgctgttgggattactaaaacaccctgcaagcatagagttcgct
gcaacaatggcaagacaattgaaccagctcggggcaagagagcaagaaattatgaaggcc
tatccaaaagtcgaggatattcgtaaaatgaagaaacggcagcaggaaacagcggcagcg
tctgcggccaaacgtgcgaaattggaggctgcgattgcaattgaagagcctgagcagcag
ccgatggaaatcgaacctgtgaaacctcctgaattgattgagctttctgagaattttatc
ggtgaccgtctaagtgtggaaattgccacggaactagttatggatagtatggcttgggtg
ccagatataatgacgacagtgttccaacgagaatatcagccaacgtctacaaccgatata
aacgtgcaacgtcaaactatcgccaggttactagccgcacagataaagcaagctaaggcc
aaaagggttaaaagggaaacgaaagaggaagatgcagtgatggaagacttaataaaaaat
ccaacaatcactgtagccgaggcaaaacgtgaaagaaaacgagaaaaggacagggagaaa
gagaaagaagcgaaggcttcattggaggcgcacgaaaagtcgcttaaaatggcaaaaaat
cgtttaaaaacgctgaagctatctgaaattacaaagcctcttcaaagagaggctaaagaa
aaaatgctcctaatggctgtaggcagaattctcggagctgaaaggatcgcagtactcggt
ggagtggcaccagtcaggtccaagatattgacaaccctagctgctacattcaacccatat
ataagggaagctgtactccgctacataactgaagacatgaggtcacggcttgatttggca
ctcggctggctctacgaggagtacgctttgcttcagggattccaaaggcgtacgactctg
acgagtaaaccgcaggaagctcctcatcaagcctacaactttttactctgcactttagtt
tctgcaatcgacttggtaccagggaaagatcgagatgtgttgttgtcccggttgtatctg
gaagctcctctaatcacagaagacgctgtggaagctttaaaactggtctcatctgatgaa
acgagagggctcgcacctttggaattacttaaggaaatggttattcggagaccgacaaag
cagctagtatttttgaacgtattactgtgtcatacaggacatgaaaataacactattcgt
gaagcagcgatagagtttgttgttcaattgtacggccgaccagagctgggcaagttgata
gaagaatatgcggtactgtatttaggtttcctgcgactaccgaatccacctgaaattgta
ttcggacaggacagaggaagaccgcaaatcgacgatcagtggagcgagtcaaccactcga
gcttgtttgggattgtatctagcattactgtctgaacaccaggatcttattcacgagctt
gccagggtttatacctcaatgggagctgacgttaagcgtattatcctacgcctggttgaa
ggaccagtgagactcttgggaatgagtagtccgcagctcttgtcccttgttgaaaactgt
ccaaaaggggcggaaaccctggttacacgagttattcacatccttacggaaaaatccgcg
cctagtgcagaattggtcgccaaagtacgtgaactgtatcaaacaagagtgtccgatgtt
agatttttgatacctgttcttaacggcttgaccaagaaagaagttatcgccgctcttccc
aaacttattaagttgaatccgattgtcgtgaaggaggtattcaacagactccttggaacc
cataataatgacagtggtataccacatatgtcgccaataactccggcggaacttctcatc
gctttgcataccatagatacaagcaaagcagaattgaaaacagtcataaaagcaacatct
ttatgctttgctgagaaacaagtctatacacaagaaacggtggcagtagtgatgcagcat
cttatggaaatgacgcccctgccgacgcttctgatgcgaacagtcattcaaagtctagct
ttgtaccccagactgagcggatttgtgatgaacattttacaacgattaattttgaaacag
gtttggaaacagcacaaggtttgggaagggtttgtgaagtgctgcgagcgaactcagccc
cagagtttttcagttatcttacaattaccgcctgcccaattggcagaggcattaaaaatg
tctccgggattgaaggcacctctactcgcacacgttgaatcgtttgccgagaatcagaaa
gctcacattccacagtctataatggatgtgatccagggaaaaatgttgcctgtagttgcc
gatgaatttgacattgctcctcccggtgaataccccttagaactcaaatcagagcccatg
gacaccgacccttcggaaccagccccacctggactggattag
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