Diprion similis: 124405860
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Entry
124405860 CDS
T08947
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
dsm
Diprion similis
Pathway
dsm03022
Basal transcription factors
dsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124405860
09124 Replication and repair
03420 Nucleotide excision repair
124405860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsm03021
]
124405860
03400 DNA repair and recombination proteins [BR:
dsm03400
]
124405860
Enzymes [BR:
dsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124405860
Transcription machinery [BR:
dsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124405860
DNA repair and recombination proteins [BR:
dsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124405860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
124405860
NCBI-ProteinID:
XP_046737072
LinkDB
All DBs
Position
4:23221554..23227013
Genome browser
AA seq
797 aa
AA seq
DB search
MGPPKRFKKDYDKGKWKKRKEDHDEYFDDDHGDGGDTEGIPDAAKNDIEKQDEGAVEDEF
GAKDYRSQMILKPDNTSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEY
KLTAYSLYAAVSVGLQTHDIIEYLKRLSKTSIPDGIIEFIQLCTLSYGKVKLVLKHNKYF
VESPFPEVLQKLLKDPVIQECRLRRNLDETDKDGFITNVQDKTKAPQFGAKTTATATPTT
APASAEGNGEQPAAEPVAVPEDISTFYDKIDKEDEDEEEEAQLKTVSFEVNQEKIEVIQK
RCIELEHPLLAEYDFRNDTVNPDINFDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPC
GAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG
CGILVTTYSMITHTQKRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHC
KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREY
LSCKTSKKLLLYVMNPSKFRCCQYLIRYHERRGDKTIVFSDNVFALKHYAIKMNKPYIYG
PTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGR
ILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPDL
MYKTREEQGQLLQQVLSASDMDADEERIPGEGPRPAMRRPGNMASMSGADDTVYYEYKKS
AASSTANKHPLFKKFRT
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgggcccgccaaagcgattcaaaaaagactatgacaagggcaaatggaaaaaacgtaag
gaagatcacgatgaatattttgatgatgaccacggtgacggtggcgataccgagggcatt
cctgatgcggctaaaaatgatattgaaaaacaagatgaaggggctgttgaagacgaattt
ggagccaaagactatcgttcgcaaatgatcttaaagcctgataacacgtcgaggccacta
tgggtggctccaaatggacacatattcttggagtcattttcaccggtgtacaaacatgct
cacgattttttaatcgctatttccgagcccgtttgtcgcccagagcacattcatgagtat
aaactgactgcctattccttgtatgcagctgtgagtgtgggcctccaaacccatgatatc
atcgaatacctaaaacggttgagtaaaactagcatcccagatggtatcattgaattcata
caactgtgcacgttatcttatggaaaggtgaaattggtcttgaaacacaacaaatacttt
gtggaatctccatttccagaagtgttgcagaaactgcttaaagatccagtcattcaagaa
tgcaggttgagaaggaacttggatgagactgacaaagatggttttattaccaatgttcaa
gataaaacaaaagctcctcagtttggagcgaaaacaacagctactgctactccaacaaca
gcaccagcctcagctgaaggaaatggagagcaaccggcagcagagccagtagcagtgcct
gaagatatctcaacattttatgacaaaattgataaagaggatgaagatgaggaggaagaa
gcacagctgaaaactgttagctttgaagtcaaccaggaaaaaattgaggttattcaaaaa
agatgtatcgagttagagcatcctttactcgcagaatacgatttcagaaatgatacggtt
aatcctgacataaattttgacctgaaaccatcagccgtgctgcgaccataccaagaaaag
agcttaagaaagatgtttggtaacggacgagccaggtcgggtgttatcgtattgccttgt
ggtgctggtaagagtttagttggcgtaacggcttgctgtacagtacggaaacgtgctttg
gtgctttgtaattctggagtatcagttgagcaatggaaacagcagtttaaaatgtggtcg
acagccgacgattccatgatttgccgatttacaagcgaagctaaggataagccaatgggt
tgtggtattctggtaacaacttactcgatgataacacatacgcaaaaacggtcgtgggaa
gctgaacagaccatgaagtggttgcaagaacaagaatggggtattatggttttagatgaa
gtacacacgatacctgcgaaaatgtttcgtcgagttttgaccattgttcaatcccactgc
aaactcggactgacagcaaccttgttaagagaggatgataaaattgcagatctgaatttt
ctaattggtccaaaactctatgaagctaactggcttgagcttcagaaaagaggatttatt
gccagggtacaatgtgctgaggtctggtgtcccatgactccagagttttatagggaatac
ctgagttgtaagacaagcaagaaactgttgctttacgtcatgaatccgagtaaatttcgt
tgctgtcagtatttgattcgatatcacgaaagacgaggtgataagacgatcgttttctcc
gataatgttttcgcactgaaacattatgcaatcaaaatgaataaaccctatatttacggg
cctaccagtcagagtgagcgcatacaaatcctccaaaacttcaagttcaatacaaaagtg
aatacaatatttgtgagcaaagtagccgacacatcatttgacttgccagaagcgaatgtt
ttgatacaaatatcctctcacggcggttctaggaggcaagaagctcaaagattgggtaga
attttacgagctaaaaaaggcgcaattgctgaagagtataatgctttcttttacaccttg
gtatcacaggatacaatggaaatgaactattcaaggaagaggcaaaggtttcttgtcaat
caaggatatgcttataaagttatcaccaaactagctggaatggatgaggaacccgactta
atgtataaaacacgtgaggaacaaggtcaactattacaacaggtattgtcagcaagtgac
atggatgcggatgaggaaaggattccgggcgaagggccaagacctgcaatgaggaggcct
ggaaacatggcatccatgtcaggtgctgatgacacagtatattacgaatacaaaaaatcc
gccgcatcatcgacagcaaataagcatccgttatttaaaaagttccgaacctaa
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