Diprion similis: 124410378
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Entry
124410378 CDS
T08947
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dsm
Diprion similis
Pathway
dsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124410378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsm03019
]
124410378
Enzymes [BR:
dsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124410378
Messenger RNA biogenesis [BR:
dsm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124410378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
DNA_pol_A_exo1
HODM_asu-like
CCD48
Motif
Other DBs
NCBI-GeneID:
124410378
NCBI-ProteinID:
XP_046744638
LinkDB
All DBs
Position
9:2357044..2372092
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AA seq
538 aa
AA seq
DB search
MYNVTASNFGEFSPKIRESLNRAKFVSFDCEFSGINSFEETKVSLFDTVEDRYQILKSSI
KRCIAIQVGLTTYNCDRDVNKYNAEVFNFYLFPNVAPGRDTVFEWRASAIEFLCSHKFDF
NKLAYDGISYLNEEEEQELRRRVADNILLRNIERSVSYMEEDKLKESYNRVAEWLKTSNV
GEPMSLDAASPMLEYLMQKELRTRYPQIWTEPRHGKIILQRVDKEMRTILEEKEDNKLEE
TLVNSYLGFSDIFKLIVSLKKPIVGHNVLLDLMFMHQQFYMPLPDKYNTFKNNIHRLFPT
IYDTKHLSFELKRLVQKKNLWESNGLATLYNYFKENRSQMLALNSPQISLCDEQSSETGR
FHEAGWDSYCAGYCFIKLAHVFAISHYGGETELRPLTNAEILSGPKAHANCINLIRARIS
HVNLAGPDPICARPQWLHVKSLGPNKMNISQIAEMFSPYGAVDVKLLKRHQALVAVGNHG
TARDILTRFRSSRDIQVAPYSLLRHSPALQILLWGGILVSGGALAWVMHRNLHKSSVS
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtataatgtgacagcgagtaatttcggagaattcagcccgaagatacgcgaatctcta
aatagagcgaagtttgtatcgttcgactgtgagttcagcggtataaattcgttcgaagag
acgaaagtgagccttttcgatactgtcgaagaccgatatcagatactcaaaagcagtatt
aagcgatgcatcgcgattcaggttggcctgacaacttacaactgcgaccgagatgtgaac
aagtataatgccgaagtcttcaatttttatctatttccaaatgtagcgccaggtagagat
accgtttttgagtggcgcgcttctgcaatagaatttttgtgctcgcacaagttcgatttc
aacaagcttgcttacgatgggatttcctatctcaacgaggaggaagagcaggaactccgt
cgcagggtcgctgacaacattctattacggaacatcgaacgatctgtatcttacatggaa
gaagataaacttaaggaaagttacaaccgtgttgccgaatggttgaaaacttctaacgtc
ggggaaccaatgagcttggacgccgcatcccccatgctagagtatctgatgcagaaagag
ctgaggaccaggtatccgcagatttggacggaaccacgacacggaaagatcatcttacaa
agagttgacaaagagatgcgcacaatactcgaagaaaaagaggataataaattagaggaa
acattggtcaactcttacttaggattttcggacatatttaaactcatagtcagtttaaaa
aaaccaattgtcggacacaacgtactcctcgatcttatgttcatgcatcaacagttttac
atgccgctaccagacaaatataacaccttcaagaacaatatccacaggttatttcccaca
atttacgacacaaaacatctcagctttgaactgaagcgattagtacagaaaaaaaatttg
tgggaatctaacggtctggcaactttgtacaattacttcaaagaaaacaggagccaaatg
ttggctctcaactcgcctcaaatctcactatgcgatgaacaatcatcagaaactggcagg
tttcatgaagctggctgggactcatactgcgcaggatactgtttcataaaattggctcac
gtttttgcaatctcacactacggaggcgaaacggaattgaggcctctaaccaatgctgaa
atactctcgggtccaaaagcgcatgcaaactgcataaatttgattcgtgccagaataagc
cacgtgaacttggctggtcctgatcctatctgcgcaaggccacaatggcttcacgtcaaa
agtctcggacctaacaagatgaatatttctcagattgcagagatgttctcaccgtatgga
gcagtggacgtgaaactgctgaaacgtcatcaagctctcgtcgctgttggaaatcatgga
accgctcgagatatattaacgcgtttccggagtagcagagatattcaagtggcgccctac
agtctgttgcgacattctccggctctgcagattctcttatggggcggtatcctcgtctcg
ggtggagctttggcatgggtgatgcataggaatctgcataaaagttcggtttcgtaa
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