Diprion similis: 124411037
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Entry
124411037 CDS
T08947
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dsm
Diprion similis
Pathway
dsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124411037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsm03019
]
124411037
03041 Spliceosome [BR:
dsm03041
]
124411037
Messenger RNA biogenesis [BR:
dsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124411037
Spliceosome [BR:
dsm03041
]
Complex B
Other components
Prp19-related factors
124411037
Complex C
124411037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_15
TPR_12
Mad3_BUB1_I
ARM_TT21_C
RPN7
ARM_TT21
Terminase_6C
TPR_10
DHR-2_Lobe_A
PPR
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
124411037
NCBI-ProteinID:
XP_046745834
LinkDB
All DBs
Position
10:9265020..9269157
Genome browser
AA seq
852 aa
AA seq
DB search
MMQREDSDGNSYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSVNLNIVYERALKE
LPGSYKLWYNYLRQRVKQLKGRCVTDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTDQ
CYITRTRQVFDRSLRALPITQHHRVWPLYIGFLKKHNVYETAVRVFRRYLKLAPEDAEEY
IEYLISTGRLDEAALKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPTKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYAQFE
ELSLSKRMEDAAKNPNPTEEDDIELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHK
RVMLYEGQPHEIINTYTEAVQTVLPQQAVGKLHTLWVAFAKFYEENGQIADARVVFEKAT
HVAYTKVDDLASVWCEWAEMEIRHDNCKEALKLMHKATTMPSRKVAYHDETETVQMRLYK
SLKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYE
KGIALFKWPNVYDIWNTYLTKFLKRYEGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKL
EEEHGLARHAMSVYERATSAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEE
NTREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQVWKEFEVRHGNEDTMRE
MLRIKRSVQAMYNTQVNMMSAQMLNSAANLSIDDSAGAGDAMRLLDNKIPPSSTDAAAQP
GFKDNIKFVRGVTEGAGRSEPQVNNPDEIDIDMDDDSEDEEKEIEEDVPVEKQAIPSKVF
GSLKTTTEDEAD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcgagaagattccgatgggaatagttacgttttcaacgaggaagatctgccg
tacgaagaggaaatcctgcgaaatccttactccgtgaagcactggcaacgctacattgat
cacttgaagagcacgaagagcgttaaccttaatattgtctatgaacgagccctgaaggag
ctgccgggaagttacaagctatggtataactacttgcgccaaagggtgaaacaactgaag
ggacgctgcgtaacagacccgctctacgaagatgtaaataatgcttttgagcgagcactt
gtattcatgcataaaatgcctcgcatctggatggactattgcactctgatgactgatcag
tgttacattactaggacccgtcaggtcttcgatcgctcgcttcgggctcttccaatcaca
cagcatcatcgtgtctggccactctacattggcttcctcaagaaacacaatgtatatgaa
acggctgtacgtgtcttcaggagatatctgaagttagctccagaagatgcggaggagtac
atagagtatttgatatcgacgggaaggttggacgaagctgcgctcaaattagcccaaatt
gtaaaccaggacgactttgtgtcgaagcatggtaaatcgaaccatcaactgtggaacgag
ctctgcgacctaatatcaaagaatcctactaagataaaatccttgaacgtcgatgccata
atcagaggtggactgaggcgatatactgatcaattggggcctctgtggaattccttggct
gattattatgttcgtagtggcctttttgagcgagccagagatatctacgaagaagccatc
caaacagtttccaccgtcagggattttacccaagtgtttgacgcttatgcgcagtttgag
gaactcagcctcagcaagcggatggaggatgctgccaaaaatcccaatccaaccgaagaa
gatgacattgaacttgaacttcgattagcaagatttgagcacctcatggaaagaagattg
ttgctgctgaacagtgtactgcttaggcaaaacccgcacaacgtacaagaatggcacaaa
cgagtcatgctctacgaggggcaacctcacgagataatcaacacgtacacagaggctgtt
caaacagtgttgccgcaacaggcagtcggcaagctacacacactgtgggttgcgtttgcc
aaattctatgaagagaacggacaaattgcagatgccagagtcgtgtttgaaaaagcgacg
catgtcgcttacaccaaggttgatgaccttgcttctgtttggtgcgagtgggcagaaatg
gagattaggcacgacaattgcaaagaggccttgaagctcatgcacaaggcaaccactatg
ccctcacgcaaagtcgcgtatcacgacgagactgagaccgttcaaatgagattgtacaag
tcactgaaagtctggtccatgtacgctgatctcgaggagagctttggcacattcaagacc
tgtaaggctgtgtatgacaagatcatagatctcaaaattgcgacgccgcagatcatcata
aactatggtctatttctggaggagaataactatttcgaggaagctttcagggcctacgaa
aagggtatcgctctgttcaaatggccaaatgtatacgacatatggaacacgtacctcacc
aaattcctgaaacgatacgagggaacgaaattggaaagaactcgcgacctgtttgaacaa
tgcttggaacattgcccgccaaagtatgccaaggcactttacttgctatacgcgaagctg
gaggaggaacatggcttagcaagacacgcgatgtcggtgtacgagcgagctactagcgcc
gttttaccagaagaaaaatttgagatgttcaacatatatataaagaaagccgctgatata
tatggagtaccgaagacgcggcagatctatgagaaggcgattgaagttttgaatgaagaa
aatacgcgggagatgtgtctccggtttgcagagatggaaactaagctcggtgaagtcgat
cgggcgagggcgatttacgctcactgcagtcagatatgcgatccccgggtaacatctaat
ttctggcaagtttggaaagagtttgaagtccgccatggcaacgaagacacgatgcgggaa
atgctgcgaatcaagaggagcgtgcaagcaatgtacaacacccaagtgaacatgatgtca
gcacagatgcttaacagtgcggcaaatctctctatcgacgacagtgccggcgctggtgac
gctatgcgacttttggacaacaagatacccccatccagtacagacgctgctgcgcaacct
ggattcaaagacaatatcaaatttgtacgaggagtaacggaaggagctggaaggtccgaa
cctcaagtaaacaatccagatgaaatagacattgacatggacgatgacagtgaagatgaa
gagaaggaaattgaagaggatgtaccagttgagaaacaagccattccgtcgaaagttttt
ggaagcctcaagaccaccacagaggacgaagctgactga
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