Diprion similis: 124413693
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Entry
124413693 CDS
T08947
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dsm
Diprion similis
Pathway
dsm03013
Nucleocytoplasmic transport
dsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124413693
03015 mRNA surveillance pathway
124413693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsm03019
]
124413693
Enzymes [BR:
dsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124413693
5.6.2.5 RNA 5'-3' helicase
124413693
Messenger RNA biogenesis [BR:
dsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124413693
mRNA cycle factors
Common to processing body (P body) and stress granule
124413693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
NPHP3_N
ATPase
nSTAND3
AAA_22
SRP54
AAA_16
nSTAND_NTPase5
AAA
AAA_7
AAA_10
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
124413693
NCBI-ProteinID:
XP_046750401
LinkDB
All DBs
Position
12:8006601..8013423
Genome browser
AA seq
1118 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHEGGQSQPVQ
VNGTTGGGNSSLDLKITGATQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVMC
NACRKWFCNGRGNTCGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIADRSFLAWLVKIPSDQEQLRARQM
SAQQMNKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSGI
GHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQLALRKFAVDDSSV
SGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTG
KTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTDKIHKSNLKVVRLCAKSREAIDSPVS
FLALHNQIKNMETNNELQKLQQLKDETGELSSVDEKRYRLLKKTAEKELLEAADVICCTC
VGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKIDF
PWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLYSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKPK
KLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGNQVNGTQNHNPYYQRNVPLDIFSRTH
DTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNLRNRRGTTSAKN
KTGPRGSKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVGE
FQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacgggcctagcagccaaaccctgactttcttggacacggaggaa
gctgatttgatcggggcagatacgcaggggagcgaattcgacttcactgacttcacttta
ccctcgccgagtcaaacccaggcttcccagcacgaaggaggccagagccaacccgttcag
gtgaatggcacaactggtggtgggaattcttcgctcgacttgaaaattaccggcgccact
caaagtcttgccgaactgcaatttgaagaggaagaagaggaagcatactataatcgagac
ctgccggaacatgcgtgtaaatactgcggcattcatgaagcgtcatgtgtcgttatgtgc
aacgcgtgtcgcaaatggttctgcaatggccgtggcaatacttgtggttcgcacatcatc
aatcacttggtgcgtgccaaacataaggaggtcactttgcacagggatggtccattgggt
gaaacggtactggaatgctactcctgtggtgtaagaaatgttttcgtgctgggttttatt
cccgccaaagccgactctgtggtggttttactttgtcgacaaccctgtgccgctcaaagc
tctttgaaggatatgaattgggatcaggagcaatggaaaccactaatcgcggatcgcagt
tttctggcttggttggttaagatcccatctgatcaggagcaattgagagctaggcaaatg
tctgctcaacaaatgaacaaactggaagagttatggagagacaacgtagatgcaacgttt
caggacctagaaaaaccaggggttgacgaagagccgcaacaagttcttctccgttacgaa
gatggatatcaatatcaaaatatatttggtccgcttgtgaagttggaagctgactacgat
aagcgccttaaggagtcacagacgcaagaaaatatagaggtacgctgggacgtaggttta
aacaagaagaccattgcttacttcatgcttgctaaaacggatggtgatatgaaattgatg
catggtgatgaattgagattgcgctacttgggagagctccacaagccatggtcaggaatt
gggcatgtgataaagatacctgataattacggagaagaagttggcattgaattaaaaaat
aactcaggtgcaccaacagaatgcatcagcaactttgtggtggatttcatttggaaaagc
acgagtttcgatcgaatgcaactggctttacgtaaattcgccgttgatgactcttctgtg
tctggatatatttatcacagactccttggtcacgaagttgaagaagttctgtttcgttgc
cacttgccaaaacactttagcgctccaaatctaccagatttgaatagatcacaagtttat
gctgtgaaacatgctgtacaaagacctttgtcccttatccaggggcctccaggtactggt
aaaactgtaactagtgcaaccatagtttaccagctggtaaaacaaaacggaggtccggta
ttggtctgcgcaccttctaatactgcggttgaccaattaactgacaaaatccataagtct
aatttaaaggttgttcgcttatgtgccaagtcgagagaagccattgactcaccggtcagt
tttcttgccctacataaccagataaagaacatggaaacaaataacgaactgcaaaagttg
cagcagctgaaagatgaaactggtgaattatcgagcgttgatgagaaacgttatagactt
ttgaaaaagacggcagagaaggagcttttagaggctgccgacgttatttgttgcacctgc
gtcggagcaggagatccaagattacaccgtttgaaattccactcgattttgattgatgaa
agcatgcaagctacggaacctgaatgcatggtgcctgtggtcttgggagccaaacaattg
attctagttggtgatcactgccaattaggaccagttgtaatgtgcaaaaaagcagctaga
gctggcttatctcaatctttatttgaacgacttgttgtactgggtattcgtccgttccgt
ttagaagttcagtaccgtatgcatccagacctgtctcggttcccatcaaattttttctac
gaaggctctctgcagaacggtgtctgtgctgatgaaaggaagttactgaaaattgatttt
ccatggcctgcgcctgacaagcctatgttcttttacgttacccaagggcaagaagaaatc
gctggtagcggcacgtcgtatctcaatcgaactgaagcttctaacgtcgaaaaaattacc
accagatttttacgttgcggtgttaaacctgaacagatcggagtaattacaccgtacgaa
ggtcagagagcttatctggttcagtacatgcaataccaaggttctttatactcaaaactc
tatcaagaaatagaggttgctagtgtcgacgctttccaaggtcgagaaaaagacataatc
atcatgtcttgcgttcgatcaaatgaacatcaaggaattggcttcttaaacgatcccaga
agattgaacgtcgcacttactcgtgctaagtacggtataatcattgttggaaatccgaaa
gtattgtcgaagcaaccgctgtggaatcacttactcagtttttataaggagcagaaagtt
ctcgtcgaaggacccctgaacaatttgaaagaatctatgattcaatttgccaaacctaag
aaactggtaaatgctgctaacccaggatctcactttatgtcaacttctatgtacgacgca
agagaagctctaattcctggttctgtttacgatcgttctggtaatcaggtcaacggtact
caaaatcataatccgtactaccagagaaatgttccgctagatattttcagcagaactcat
gatacgatcagctacattagcccagagagagcacaagctgctatgaataatgttccggtt
cctgttggaatgtttatgaacatggctcatgttccaccgcgattctacaatcaacatcag
caagctctacaagcaaggcagaatctaagaaatcgcagaggcacaacttcggctaaaaac
aaaactggtcctcggggaagtaaactcagtcaaacggaacaaaatacgcagccctatagc
caaccaggactcccgctcactcaaggaactacgcaaggaatgtcacagccaggctttagc
ctgtcccagccgggtcttagtcaggcggagttgtcacaagactcgtttgcagttggtgaa
tttcagtcacaaatggacggtttattgtctcaggattctacttatcaaggagatagaagc
ggattttaccaatcaggccagtcgcaagcaggaggccagttctcccaaccgtactga
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integrated database retrieval system
