Dyadobacter sandarakinus: HWI92_05720
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Entry
HWI92_05720 CDS
T07768
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dsn
Dyadobacter sandarakinus
Pathway
dsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWI92_05720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsn03019
]
HWI92_05720
03016 Transfer RNA biogenesis [BR:
dsn03016
]
HWI92_05720
Enzymes [BR:
dsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HWI92_05720
Messenger RNA biogenesis [BR:
dsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HWI92_05720
Transfer RNA biogenesis [BR:
dsn03016
]
Prokaryotic type
tRNA degradation factors
HWI92_05720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
KH_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QRR00438
UniProt:
A0ABX7I5F6
LinkDB
All DBs
Position
1428420..1430555
Genome browser
AA seq
711 aa
AA seq
DB search
MLFNIVTKTIPLPDGREITIETGKLAKQADGSVVVRLGNTMLLATVVANKDIKEGVDFLP
LSVDYQEKFASAGRIPGSFQRREGKLSDHEVLTSRLVDRVLRPLFPEDYHAEVQVNILLI
SADANALPDALAALAASAALAASDIPFNGPVSEVRVAKINGEYVINPGTEALVNATLDLM
VGATYDDIAMVEGEMDEVTEEEVIEALKVAHGVIKDQCQALKEFETEVGKTQKREYIGDP
TDAELEARVRAFAYDKIYAVAQQGSSNKQVRKEGFKAVWEEFLTTIGEEEVVSASLAKRY
FNDLVWEASRRLVLDERTRLDGRKLDEIRPIASEVDFLPNAHGSALFTRGETQSLTTVTL
GTKNDEQIVDTPLKYGYSKFLLHYNFPGFSTGEVKPNRGPGRREVGHGNLALRALKKVLP
VAEDNPYTIRIVSDILESNGSSSMATVCAGSLALMDSGLKVKAPVSGIAMGLISDAATGK
YAVLSDILGDEDHLGDMDFKVTGTEKGITACQMDMKVNGLSYEVLTEALMQAKAGRLHIL
GEMNKTITESRPDLKPHTPRAVVIKIDREMIGAVIGPGGKVVQDIQKESGATISIEEKDG
AGFVSIFSADKTSMEKAVARIKGIILVPEVGELYTGKVKSIMPFGAFVEFLPGKDGLLHI
SEIKWERLEKMDGVLEVGEEIQVKLVEIDKKTGKYRLSRKVLLPKPENKKE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgctctttaatatagttacgaaaactataccccttccggacggacgggaaatcaccatt
gaaacaggaaaattagctaaacaagccgacggttcggttgtggtacggctaggtaatacc
atgctgctggccactgttgtcgctaataaagatattaaagaaggtgtcgacttcctgcct
ttgtctgtggactatcaggaaaagtttgcttctgccggacgtattcccggaagcttccag
cgtcgcgaaggaaaactgtcggaccatgaagtgcttaccagccgcctcgtagaccgtgtt
ttgcggcctttgttccctgaggattaccacgctgaggtacaggtgaacattctcctaatt
tctgctgacgcgaatgcattgcctgatgcacttgctgcgcttgcggcttctgctgcactg
gctgcttccgatattcctttcaatggaccggtttcggaggtgcgtgtggcgaaaatcaat
ggagagtacgtgatcaatccgggtactgaggccctggttaatgcgacccttgatctgatg
gtaggtgctacctatgacgacattgccatggtagaaggcgaaatggatgaagttaccgaa
gaagaggtaatagaagcgctgaaagtagcgcatggcgtcattaaagatcagtgccaggct
ttgaaagagtttgaaactgaagttggcaagacacaaaaaagagaatacataggcgacccg
accgatgcggagcttgaagcacgggtacgcgcatttgcatatgataaaatatatgcagtt
gctcagcagggatcatccaacaagcaggttcgtaaagaaggatttaaagcagtttgggaa
gaattcctgactacgatcggtgaagaggaagtagtgagcgcctcgcttgcaaaacgctac
tttaatgatctggtatgggaagcttcgcgccggcttgtgctggatgaaagaacccgtctt
gacggtcgtaagcttgatgaaatccgtccgattgcttcggaagttgattttcttccgaac
gcacatggttcagcactttttacgcgtggtgaaacccaatcgctgactactgtgacactg
ggtaccaaaaatgacgagcagatcgtagataccccattgaaatacggatacagcaaattc
ctgctgcattataactttcccggattctcaaccggtgaagtaaagccaaaccgcggccct
ggccgtcgtgaagtaggacacgggaacctggcgcttcgtgcactgaaaaaggtgcttcct
gttgctgaggataatccttatacaatccgtatcgtttccgatattcttgagtcaaacggt
tcatcatcgatggctactgtttgcgcggggtcactggctttgatggactccggtctgaaa
gtgaaagcacctgtatcaggcattgcgatgggattgatctcagatgcagctaccggcaaa
tatgcggtactttccgacatccttggcgatgaagatcacctgggtgacatggactttaaa
gtaaccggtacggaaaaagggattacggcttgccagatggatatgaaggtaaatggtttg
tcctacgaggtgcttacagaagcattgatgcaggcaaaagccggacgacttcacattctt
ggtgaaatgaataaaacaatcacagagagccgcccggatcttaaaccacatacgccacgt
gctgttgtgattaagattgacagggagatgattggtgcagtaatcgggcctggcggaaaa
gttgttcaggacattcagaaagaatccggtgcaacgatctcgattgaagaaaaagacggt
gccggctttgtaagcatattttccgcggataaaacatccatggaaaaagcagttgcccgt
atcaaaggcattatcctggtacctgaggtaggtgagctttatacaggtaaagtgaagtca
atcatgccgtttggcgcatttgttgaattccttcctggtaaagacggcttgctgcacatc
tccgagatcaagtgggagcgtcttgagaaaatggacggtgtactggaagtaggagaagaa
atacaggttaaactcgttgaaatagataagaaaactggtaaatatcgcttgtctcgcaag
gttttgttacctaagccagagaacaaaaaagaataa
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