Dyadobacter sandarakinus: HWI92_20005
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Entry
HWI92_20005 CDS
T07768
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dsn
Dyadobacter sandarakinus
Pathway
dsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWI92_20005 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsn03019
]
HWI92_20005 (recQ)
03400 DNA repair and recombination proteins [BR:
dsn03400
]
HWI92_20005 (recQ)
Enzymes [BR:
dsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HWI92_20005 (recQ)
Messenger RNA biogenesis [BR:
dsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HWI92_20005 (recQ)
DNA repair and recombination proteins [BR:
dsn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HWI92_20005 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
DUF8096
ESCRT-II
Motif
Other DBs
NCBI-ProteinID:
QRR03028
UniProt:
A0ABX7IBD2
LinkDB
All DBs
Position
complement(4881645..4883858)
Genome browser
AA seq
737 aa
AA seq
DB search
MVKKVDSVVLDTLKEKLKEIFGYSQFRGDQEVIIQNILLGKNTFVIMPTGAGKSLCYQLP
ALVSDGLTIVISPLIALMKNQVDQLTAFGINAQFLNSTLTKAEMNRVKTDALDGSLKLLY
IAPESLTKEDNLDFLKKVRISFVAIDEAHCISEWGHDFRPEYRRIYGIIENIGSLPIIAL
TATATPKVQQDIRKNLQMEEAETFKSSFNRKNLYYEVRPKKDIKKQLIRYVRNNKGKSGI
VYCLSRKTVEEVAELLNVNDVRALPYHAGLDASTRMANQDAFLNEEVDVIVATIAFGMGI
DKPDVRFVIHYDVPKSLEGYYQETGRAGRDGLEGNCLMFYSYDDIQKLEKFNKDKTVTER
DNARHLLNEMVAYATLGVCRRRQLLSYFGEYLEKDCGFCDNCNKSTEKTKVQDGIILILN
AVYQTEQRFDCEHIADLLTATENQYVRSYEHDKLDVYGKGLEINESRDYWISAIRQLVIF
NYLEKDVENYGIIRISEKGLRYLSDPYPVTLHKDHNFEEEEVKAEDEEKDVTTGNGSAHA
YDEALLGMLKALRKKVAKEKNLPPYVIFQDPSLEEMATTYPTTQQEMAQINGVGMGKVQK
FGRQFIDLITKYVEENEIETAKDVVIKSTVNKSKIKIFIIQQVDRKVSLDEIAEVKDLAL
ADVIEEVEHICYSGTKLNLDYYINQVIDRERQQDIYDYFMSAETDNIARALDEFANDEIS
EEELRLMRIKFLSELAN
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagaaggttgattcagttgtattggacacattaaaagagaaactgaaagagata
ttcgggtacagtcaattcaggggtgaccaagaagtcatcattcaaaacatactgcttgga
aaaaacactttcgtcatcatgcctaccggtgcaggcaagtcgctgtgctaccagttgccg
gcgctggtcagtgatggtcttaccatagtcatttcaccattaattgccctgatgaagaat
caggtggaccagcttactgctttcgggatcaatgcacagttcctgaattcgacccttacc
aaggcggagatgaaccgcgtaaaaaccgatgcgctggacggcagtctcaaactgctctat
attgctccggagtcgcttacgaaggaagataacctggattttctgaaaaaggtaaggatc
tcgtttgtcgccatcgacgaagcacattgtatctctgagtggggtcatgatttcagacct
gaataccggcgcatttacgggattatcgagaatatcggcagcctgcccatcattgcactt
acggccactgccacccccaaagtacagcaggatatccgcaagaacctgcagatggaagaa
gcagaaacctttaaatcgtcattcaatcgaaaaaacctttactacgaagtccgtcctaaa
aaggacataaagaaacagctgatccggtatgtccgcaacaacaaaggcaaatcgggtatt
gtatactgcctgagccggaaaacggtggaagaagtggccgagctgctgaatgtaaatgat
gtgcgcgcgctcccctaccatgctggtctggacgccagcacacgcatggccaaccaggat
gctttcctcaatgaggaagtggacgtaattgtagctaccatcgcattcggaatgggcatt
gacaagccggatgttcggtttgtgatccattacgacgttccaaagtccctcgaaggatat
taccaggaaacagggcgcgccggtcgtgatggtctggaaggcaactgtctgatgttttac
agctatgacgatattcagaagctcgaaaagtttaacaaagacaaaactgttaccgaacgt
gacaatgcccgtcacttactgaatgaaatggtggcctatgccacactgggcgtatgtcgt
cgccgccagctgctgagctacttcggagagtatcttgaaaaagactgcggcttttgcgac
aactgcaacaagtctaccgaaaaaacaaaagtgcaggatggtatcatattgatcctgaat
gcagtataccagactgagcagcggttcgactgcgagcacatcgcggacctgcttactgcg
actgaaaatcagtatgtcagaagctatgagcacgacaagctggatgtatatggtaaaggt
cttgaaatcaatgaatcgcgggattactggatttcggccatccgccagctggtaatcttt
aattaccttgaaaaggacgttgaaaattatggtatcatcaggatcagtgaaaaagggctg
agatacctgagcgacccctacccggttaccctgcataaagaccataactttgaagaggaa
gaggttaaagcagaagatgaggagaaggatgtaactaccggcaatggaagtgcacatgct
tacgacgaagccctgctcgggatgcttaaggcactgcgtaagaaggtcgccaaggaaaaa
aacctgcctccgtatgtgattttccaggatccgtcactggaagaaatggctaccacctac
cctactacccagcaggaaatggcccagatcaatggggtcgggatggggaaagtgcagaag
tttggcaggcagttcatagacctgatcacgaagtacgtcgaggagaatgagattgaaact
gcaaaagatgtagtcatcaaatcgacggttaataaatccaaaatcaagatctttatcatt
cagcaggttgacaggaaagtgagcctggacgaaattgccgaagtaaaagaccttgcattg
gcagatgtgattgaagaagtggagcatatctgctactcaggtaccaagctcaacctggac
tattacatcaatcaggtgattgaccgggagcggcagcaggacatttacgattactttatg
tccgcagaaacagataatatcgcacgggcgctggacgaatttgcgaatgatgaaatcagc
gaagaggaactaagactgatgcgaattaaattcttatcagagctggccaactga
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