Dickeya solani IPO 2222: A4U42_00865
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Entry
A4U42_00865 CDS
T04410
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4U42_00865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_00865
Enzymes [BR:
dso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4U42_00865
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4U42_00865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANE77641
LinkDB
All DBs
Position
210150..213599
Genome browser
AA seq
1149 aa
AA seq
DB search
MPEQYRYTLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQ
QFTAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPH
AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF
RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRD
AEHVYQQVSKGTLPAGIEYWQSLFFSQPLPALFSYLPTGTLLVNTGDIQQGAERFWQDIQ
QRHDSRRVDPMRPLLPPDALWLPVDTLFAELKQWPRVQLRGDTLPDKAANINLGYQPLPE
LAVQHQNKSPLDALRRFVEQFGGQIVFSVESEGRRETLQELLSRIKLSPAPVKSLEQTAS
PGCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYSGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEDSA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFD
TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVHW
RDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKTAQRLNELVPEARIAV
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISSQTDVELRLPALLPDDFIPDV
NTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEG
NDKGGFVEFSQHNRVDPTHLIGLLQRDPKVYRLDGPSRLKFIKDLSGYPQRLTFITTLLE
EMSQHTCAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgctataccttgcctggcaaagcgggtgaacaacgcctgttaggc
cagcttaccggcgcagcctgcgccgtcgaatgcgcagagatcgttgaacgtcacgccgga
ctggtggtgctgattacccctgacatgcagaatgccctgcggttgcgcgacgaaatccag
cagtttaccgctcagccggtaatgacgctgccggattgggaaaccttgccgtacgacagt
ttttccccccaccaggaaattatctccgcccggttatccaccctgtaccagctaccctcg
ctgacgcgcggggtgttgatcctgccggtcaataccctgatgcagaaagtgtgtccgcac
gctttcctgcacggccatgcgctgatgctgaaaaaaggccagcgcctgtcgcgcgacagg
ctgcgcaaccagttggaacaggccggctaccgcagcgtcgatcaggtgatggagcatggc
gaattcgctacccgcggcgcgctgctcgacctgtttcctatgggcagcgaagagccgttc
cgtatcgatttcttcgacgatgaaatcgacagtttgcgactgtttgacgccgatacccag
cgcacgctgaatgaagtcgaacagattcacctgttgccggctcgggagttccctaccgac
aagaccgccattgagttgtttcgtagccagtggcgcgagcaatttgaggtccggcgcgac
gccgagcacgtctaccagcaggtgagcaaaggcaccctgcccgccgggatcgagtactgg
caatcactgttcttcagccagccgctgccagcgctgttcagctatctgccaaccggcacg
ctgctggtcaataccggcgacatccaacaaggcgccgagcgtttctggcaggatatccag
cagcgccacgacagccgccgggtcgacccgatgcgcccgctgttgccgccggatgcgctg
tggctgccggttgatacgctgtttgccgaactcaaacaatggccgcgcgtacagctgcgc
ggcgacacgctgccggataaagccgccaatatcaatctgggttatcagccattgccagag
ctggcagtccaacaccagaacaaatcgccgctggatgcgctgcgccgttttgtggagcag
ttcggtgggcagattgtattttcggtggaaagcgaagggcgccgggaaacgttgcaggag
ttgctgtcccgtatcaagttgtcccctgcgccggtgaaaagcctggagcagacggcgtcg
ccgggttgctacctgatgatcggcgccagcgagcacggctttattgataccctgcgccag
cgcacgctgatctgcgaaagcgacctgctgggcgaacgcgtcagccgtcgccgtcaggac
agccgccgtaccatcaacaccgataccttgatccgcaacctggcggagttacgcccgggc
cagccggtggtgcatctcgaacacggcgtcggccgttactccgggctgaccacgctggaa
gccggcggcatcaaggcggaatacctgattctgcattacgccggcgaagacaaactgtat
gtgccggtgtcgtcgttgcatcttatcagccgctatgccggcggcgccgaggatagcgcg
ccgctgcacaagctgggcggagacgcctggacgcgggcgcggcagaaagcggcggagaaa
gtgcgcgacgtggccgccgaactactggatgtttacgcccagcgcgccgcccataccggc
ttcgccttcaaacacgaccgggagcagtaccagctgttctgtcagggtttcccgtttgat
accacgccggatcaggcgcaggccatcaacgccgtgctgagcgacatgtgccgcccgctg
gcgatggaccggctggtgtgcggcgacgtcggcttcggcaaaaccgaagtggcgatgcgc
gccgcgtttctggcggtggagaaccacaagcaggtggcggtgctggtgccgaccaccctg
ctggctcagcagcacttcgacaatttccgtgaccgtttcgccaactggccggtacgtatt
gaaatgctgtctcgcttccgtagccagaaagaacaaacccaggtgctggaacagacgcag
gaaggcaaggtggatattctgatcggcacccacaaattactgcaaagcgacgtacactgg
cgggatttgggtttgctgatcgtcgatgaggaacaccggttcggcgtgcgccacaaggag
cgtatcaaagcgatgcgcgccaatgtcgatatcctgacgctcaccgcgacgccgattccg
cgcaccctgaacatggcaatgagcggcatccgcgatctgtcgatcatcgccacgccgccg
gcacgccgtctggcggtcaaaacctttgtgcgcgagtacgacagtctggtagtgcgtgag
gccatcctgcgtgaaatcctgcgcggcgggcaggtgtactacctctacaacgacgtagaa
aacattgaaaaaaccgcccagcgcctgaacgagctggtgccggaagcccgtattgccgtc
ggccacggtcagatgcgcgaacgcgatctggagcgggtgatgaacgacttccatcaccag
cgtttcaatgtgctggtgtgtaccaccattattgagaccggcatcgatatcccgagcgcc
aataccatcatcatcgaacgcgccgaccacttcggcctggcgcagttgcatcagttgcgc
ggccgcgtcgggcgatctcaccatcaggcttacgcctatctgcttacgcccaatcccaag
gcgatgagcagcgatgcccacaagcggctggaggccatcgcctcgctggaagatctgggg
gcgggcttcgccctcgccacccacgatctggaaatccgcggcgcgggcgaactgctgggt
gaagaccagagcggccagatggaaagcgtcggtttctcgctgtacatggacctactggaa
agcgcggtggagtcgctcaaggccggacgagagccgtcgctggaagacctgatcagcagc
cagaccgacgtggagctgcgtttgccggccctgctgccggacgacttcattccggacgtc
aatacccgtttgtcgttttacaaacgtatcgccagcgccaaaaatgacaacgaactggat
gacctgaaggcggaactgatcgaccgtttcggcaaactgccggacgccgcccgtcacctg
ctgcaggtggccggtttgcgtcagcaggcgcaaaccctgggcatcaagcgtatcgaaggc
aacgacaagggcgggtttgtcgaattcagccagcataatcgcgtcgatcccacacatctg
atcggcctgctgcaacgcgaccccaaagtttatcgtctggatggccccagccggttgaaa
ttcatcaaggatctgagcggatacccgcagcggctaacgtttatcaccaccctgttggag
gagatgtcgcagcatacgtgtgccgcctga
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