Dickeya solani IPO 2222: A4U42_03250
Help
Entry
A4U42_03250 CDS
T04410
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso00040
Pentose and glucuronate interconversions
dso01100
Metabolic pathways
dso02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
A4U42_03250
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
A4U42_03250
Enzymes [BR:
dso01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
A4U42_03250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
ANE74434
LinkDB
All DBs
Position
798529..799743
Genome browser
AA seq
404 aa
AA seq
DB search
MNNSRMSSVSTQKTTGRSALGTKSALAAIIATTMMVSAASAASLQTTKATEAASTGWATQ
SGGTTGGAKASSSKIYAVKSISEFKAALNGTDSSSKIIQITGTIDISGGKAYTSFDDQKA
RSQISIPSNTTIIGIDSKGKFTNGSLVVKGVSNVILRNLYIETPVDVAPHYEDGDGWNAE
WDAAVIDSSDHVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGALDIKRGSDYVTVSNSRF
ELHDKTILIGHSDNNGSQDAGKLRVTFHNNLFDRVGERTPRVRFGSVHAYNNVYIGDVNH
KAYRYQYSFGIGTSGSLLSESNAFTIDNLKKISGRDKECSVVKAFNGKIFSDKGSIINGA
SYNLNGCGFGFSAYSAKIPYKYSAQTITTSLASSISSNAGYGKL
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaacaactcacgtatgtcttccgtttcaacacagaaaacaacaggacgttctgccctg
ggaaccaaaagcgcgctggcggcgattatcgctaccaccatgatggtctctgccgcttcc
gccgccagtctgcaaaccaccaaagcgacagaagcagcttcaaccggctgggcgacgcag
agcggcggtaccaccggcggcgcgaaagcgtcatcatccaaaatctacgcggtgaaaagc
atcagcgaattcaaagcagcgctgaacggaaccgattcgtcgtccaagatcatccagatc
accggaacaattgatatcagcggtggtaaagcctacaccagttttgacgatcagaaagcc
cgcagccagatcagcattccatccaacaccaccatcatcggtatcgacagcaaaggcaag
ttcaccaacggttcgctggtagtgaaaggcgtcagcaacgttatcttgcgtaacctgtat
atcgaaacgccggtggatgtggcgccgcattacgaagatggggatggctggaacgccgag
tgggatgcggcagtaatcgatagctcagaccacgtttgggtcgatcatgtcaccatcagc
gacggcagcttcaccgatgacaaatacaccaccaaaaacggcgaaaaatatgtgcagcat
gacggcgcgctggatatcaagcgcggctccgactacgttaccgtctccaatagccgcttc
gagctgcatgacaaaaccatcctgatcggccacagcgacaacaatggctcgcaggacgcc
ggcaaactgcgcgtcaccttccacaacaacctgtttgaccgggtcggcgaacgtaccccg
cgcgtacgctttggtagcgtccacgcttacaacaacgtttacatcggcgacgtcaaccac
aaagcctaccgctatcagtacagcttcggtatcggcaccagcggtagcctgctgtctgag
tccaacgcgtttaccattgataacctcaagaagatcagtggccgcgacaaggaatgcagc
gtggtcaaggcgtttaacggcaagatcttctccgataaggggtcgatcatcaacggcgcc
tcgtacaatctgaatggttgcggctttggcttcagcgcatatagcgccaagatcccgtac
aaatattcagctcaaaccatcaccaccagtctggcaagcagcatcagcagcaacgcgggt
tacggcaaactgtaa
DBGET
integrated database retrieval system