Dickeya solani IPO 2222: A4U42_03415
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Entry
A4U42_03415 CDS
T04410
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
dso
Dickeya solani IPO 2222
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dso03009
]
A4U42_03415
Enzymes [BR:
dso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4U42_03415
Ribosome biogenesis [BR:
dso03009
]
Prokaryotic type
rRNA helicases
A4U42_03415
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UBA_7
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANE74465
LinkDB
All DBs
Position
837328..838680
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AA seq
450 aa
AA seq
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MTATNFSEFDLDDSLLDALRDMGFSRPTAIQAVAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLLDFPRKKSGPPRILILTPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTMLFSATLEGDAIQNFAERLLNDPIEVEAEPSRRERKKILQWYYRADDVQHKTALLS
HLLKQPDVTRSIVFVRKRERVHELVDLLRAAGIESCYLEGEMVQAKRNEAIKRLSEGRVN
VLVATDVAARGLDILDVSHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLL
EKIGRYLNEPLKARVVDELRPATRAPSPKTTGKPSKKVLAKRNELKQKEKEKQKAKVKVR
HRDSKNIGKRRQPSAKASAEPQKEKPTDNS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaccaatttttccgagtttgatcttgacgatagcctgcttgacgccctgcgc
gacatgggcttcagccgcccgaccgccattcaggccgtggctattcccccggcgatggaa
ggacgtgacgttctgggctcagcaccgaccggaaccggtaaaaccgcggcttatctgctg
ccggttttgcagcatctgctggactttccacgtaaaaaatccggcccgccgcgtatcctg
attctgaccccgacccgggagctagcgatgcaggtggcggatcaggctcgggcgatggct
gcccacacccatctggacattgccaccatcaccggcggcgtggcctacatgaatcacgcc
gaagtgttcagcgagaatcaggatgtggtggtcgctaccaccggccgcctgctgcagtac
atcaaagaggaaaactttgactgccgtgcggtggaaaccctgattctggatgaagccgac
cgcatgctggacatgggcttcgctcaggacatcgagcatatcgccggagaaacccgttgg
cgcaagcagaccatgttgttctccgccacgctggaaggcgacgccattcagaatttcgcc
gagcgtttgctgaacgaccccatcgaagtggaagccgaaccgtcacggcgcgaacgcaaa
aaaatcctgcagtggtactaccgcgccgacgatgttcagcacaagaccgccttgctgagt
cacctgctcaagcagccggatgtaacccgttcgatcgtgttcgtgcgtaagcgcgagcga
gtacatgaactggtggacttgctgcgggcagcgggcatcgagtcctgttatctggaaggg
gaaatggtgcaggccaaacgcaacgaagccatcaagcggttgagcgaaggccgggtaaac
gtgttggtcgccaccgatgtcgctgcacgcgggctggacattctggacgtcagccatgta
ttcaacttcgatttgcctcgcacttcagacgtttacctgcaccgcatcggacgtaccggc
cgcgccggtcgtaaaggttgcgccatctcgctggtggaagcgcatgactacctgctgctg
gagaagatcggccgttatctgaatgagccgctaaaagcgcgcgtagtcgatgaactgcgt
ccagccactcgggcgccgagccccaaaaccaccggcaagccgtctaaaaaagtgctggcc
aaacgcaatgagctgaagcaaaaagagaaagaaaaacagaaagcgaaggtcaaagtacgc
catcgcgacagcaaaaatatcggtaaacgccgccagcccagcgccaaagcgtcagcggag
ccgcagaaagaaaaaccgacagataacagctga
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