Dickeya solani IPO 2222: A4U42_08685
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Entry
A4U42_08685 CDS
T04410
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03030
DNA replication
dso03410
Base excision repair
dso03420
Nucleotide excision repair
dso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4U42_08685
03410 Base excision repair
A4U42_08685
03420 Nucleotide excision repair
A4U42_08685
03440 Homologous recombination
A4U42_08685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dso03032
]
A4U42_08685
03400 DNA repair and recombination proteins [BR:
dso03400
]
A4U42_08685
Enzymes [BR:
dso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A4U42_08685
DNA replication proteins [BR:
dso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4U42_08685
DNA repair and recombination proteins [BR:
dso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
A4U42_08685
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4U42_08685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Prok-E2_E
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ANE75404
LinkDB
All DBs
Position
complement(2066614..2069448)
Genome browser
AA seq
944 aa
AA seq
DB search
MVQIADNPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLLQQYHPSHVAV
VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGT
LAQQAERAGKPVLISTGDKDMAQLVTPNITLINTMNNTILGPDEVCAKYGIPPSLIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLAGLGGLDVLYADLDKIAGLTFRGAKTMAAKLEQNK
EVAYLSYKLATIKTDVELELGCEQLTVNELDVVELRELFTRYEFKRWLADVEDGKWLQNG
RKNQPAVPFVKVTVEATPKEATSVLSQDGYVTILDENVLLDWLERIKTAALFSFDTETDG
LDTLTANLVGVSLAIKPGEAAYLPLGHITSRVYSSNIYSSTVSPATRMSTQLDRDRVLAL
LKPLLEDEGIRKIGQNLKFDKGVMARCGIDLRGIAFDTMLESYVIDSVAGRHDMDSLSER
YLQHKTITFEEIAGKGKKQLTFDQIPLAQASVYAAEDADVTLRLHETLWAKLEPQQELRK
VFQNIDMPLVPVLSRIERTGVLIDTTILAEHSQELTQRLAELEVQAHELAGEVFNLSSPK
QLGAILYEKLQLPIIKKTPKGAPSTNEEVLAELALDYPLPKLILEHRGLAKLKSTYTDKL
PQMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRILAA
DYSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGL
IYGMSAFGLSRQLAIPRNEAQKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLY
LPDIHSRNANSRKAAERAAINAPMQGTAADIIKKAMIAIDAWLQQEKPLVTMLMQVHDEL
VFEVHHSVLDEASAKIRRLMEGCMQLDVPLQVDIGTGSNWDQAH
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggttcaaatagcagataaccccctcattctggttgacggttcatcgtacctgtaccgc
gcttatcatgccttccccccactgaccaacggtgccggtgaaccgaccggcgcgatgtat
ggtgtgctcaacatgctgcgcagtttgttgcagcaataccatcccagtcatgtcgcggtg
gtgtttgatgcgaagggtaagacgtttcgtgatgatttgtttgagcactacaaatctcac
cgaccgccgatgccggatgatctgcgtgctcagattgaaccgttacaccgcatggtaaaa
gcgatgggattaccgttgctctccgtgtccggcgtagaggcggatgacgtgattggaacg
ctggcgcagcaggcggaacgtgcgggtaaaccggttctgatcagcaccggtgacaaggac
atggcgcagctggtgacgccgaatatcacgctgatcaacaccatgaataacactattctg
gggccggatgaggtatgcgctaaatacggtattccgccgtcgctgatcattgatttcctg
gctctgatgggggattcctccgacaacattcccggtgtgccgggtgtgggtgaaaaaacc
gcacaggcgttacttgcagggctgggggggctggatgtcttgtacgccgacctggataag
attgcgggcctgaccttccggggcgccaaaactatggcagccaagctggaacagaataaa
gaggtggcttacctttcctataagctggctacgataaaaacggatgttgaactggagttg
ggttgtgaacaactgacggtgaatgagctggacgtggtggaactgcgcgaattgttcacc
cgttatgagttcaaacgctggctggcggatgtggaagacgggaagtggttgcagaatggc
agaaagaaccagcctgcggtgccgtttgttaaagtgacggtggaagcaacaccgaaagaa
gcgaccagcgtgctgtctcaggatggttacgtcaccattctcgatgagaacgtgctgctg
gattggcttgagcggataaaaaccgccgccctgttctcattcgataccgaaaccgatggt
cttgataccctgaccgccaatctggtgggggtgtcgttggcgattaaaccgggcgaagcg
gcttatctgccattaggtcatattacgtcgagagtgtattccagtaatatttacagcagc
acggtatcgcctgcgacgagaatgtccacgcagttggatcgcgatcgggtactggcgttg
ctgaaaccgctactggaagatgaaggcattcgcaagatcgggcaaaacctgaaattcgat
aaaggcgtgatggctcgttgcggtatcgacctgcgcggcattgcctttgataccatgctg
gaatcctatgtgattgacagtgtggctggccgccatgacatggacagcctgtcagagcgc
tatctgcaacataagaccatcacgtttgaagagattgccggtaagggcaagaagcagctg
acgttcgatcagattccgctggcgcaggcatcggtctatgcggctgaggacgctgatgtg
acgctgcgtctgcatgagacgctatgggcgaagctggagccgcagcaggagctgcgtaaa
gtattccagaatatcgatatgccgctggtgccggtgttgtcgcgtatagagcgcactgga
gtgctgatcgataccacgattctggcggagcattcgcaggagctgacacaacgtctggcg
gaactggaagtgcaggcgcatgaactggcaggggaagtgtttaatttgtcttctcccaag
cagttaggtgccattctgtacgagaaactgcagttgccgatcatcaaaaaaaccccaaag
ggcgccccttctactaacgaagaagtgctggccgagctggcgctggattatccgctgcct
aagttgattctggagcatcgcgggctggcgaagctgaaatccacttacacagataaactg
ccgcagatgatcaatccgctgaccaagcgggtgcacacctcctatcatcaggcggtaaca
gcaaccggtcgtctttcctccagcgatcctaacctgcagaatattccggtgcgtaatgaa
gaagggcggcgtatccgtcaggcgttcattgcaccagagggataccgcattctggcggcg
gactactcgcaaatcgaattacgtatcatggcgcatctgtctcgggatgccggattgttg
agggccttttcccacggtctggatattcaccgcgccaccgccgccgaagtattcggtttg
ccgctcgacagagtgaccaccgaacaacgccgcagcgccaaagccatcaactttggtttg
atttacggcatgagtgcgtttggcttgtctcgccaactggctattccgcgtaacgaagct
cagaaatacatgaatctctattttgaacgttacccgggcgtgcaggagtacatggaacgc
actcgtcagcaggcagcggatcaaggatatgtgtccacgctggatggccgacgcctctat
ttgccggatattcattcccgtaacgccaatagccgcaaggcagcggagcgggcggctatt
aacgcgccgatgcaaggtaccgcggcggacatcatcaaaaaagcgatgatcgccattgat
gcctggctgcagcaggaaaagccgttggtgacgatgctgatgcaggtacacgatgaactg
gtgtttgaagtgcaccactccgtactggatgaagccagcgcgaaaatacgccgtctgatg
gaaggctgcatgcagctggatgtgcctttgcaggtggatatcggcaccggcagtaactgg
gatcaggcccattaa
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